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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgccccgtcttcatctgccttcgttctcactcattcaaacgccacccatgcatccttcgtaactcagcaggttaactgaatattgtgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTGCGCGCACTCAGCATGTCTGTCCTCCGCGACATCCTGAGCAACGGATCCG

Basic information

species Zea mays
transcript GRMZM2G107101_T06
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107101_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os01g08700.6 (Oryza sativa), 3'ss of exon 14
gcatgccccgtcttcatctgccttcgttctcactcattcaaacgccacccatgcatccttcgtaactcagcaggttaactgaatattgtgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTGCGCGCACTCAGCATGTCTGTCCTCCGCGACATCCTGAGCAACGGATCCG
||||| ||  ||||| ||||   ||  || |  |||| | ||    || ||| |||| | | | |  || ||   | ||||||| |||  || ||||||||||||||||||||||||||||||| ||||| ||||| || || || || || |||||||||||||| ||||| ||||||||| ||| || ||||    
gcatgtcc--tcttc-tctgatctcactcacgttcatgccaaacttactcat-catcatccatgatccatcatcctgactgaatcttg--atatgcagTGCCGTCTATCAACCACCATCCGCTGTCTTTCGCACCCCAGCGCGCATGTCCGTGCACTCAGCATGTCCGTCCTTCGCGACATCTTGAACAGCGGACAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91873510|gb|EB403467.1|EB403467
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCCACCACCATCCGCTGCCTTTCTC
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTC
EST: gi|211125421|gb|FL376738.1|FL376738
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|6827225|gb|AW330868.1|AW330868
EST:     GGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATNCTGCTGAAG                         TGCCGTCTATCAACCACCATCCG-TGCCTTTCTCACCCA-GTGCACACGT
genomic: GGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAAT-CTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGT
EST: gi|116818296|gb|EC861304.1|EC861304
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|211533313|gb|FL400718.1|FL400718
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCA
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCA
EST: gi|32845254|gb|CD984935.1|CD984935
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|12046987|gb|BF729126.1|BF729126
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
EST: gi|30087797|gb|CB886003.1|CB886003
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         TGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... tgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccacccatgcatccttcgtaactcagcaggttaactgaatattgtgatctgcagTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTGCGCGCACTCAGCATGTCTGTCCTCCGCGACATCCTGAGCAACGGATCCG
                                    tgaatatt  TA-rich tract