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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgccccgtcttcatctgccttcgttctcactcattcaaacgccacccatgcatccttcgtaactcagcagGTTAACTGAATATTGTGATCTGCAGTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTGCGCGCACTCAGCATGTCTGTCCTC

Basic information

species Zea mays
transcript GRMZM2G107101_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G107101_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os01g08700.6 (Oryza sativa), 3'ss of exon 14
gcatgccccgtcttcatctgccttcgttctcactcattcaaacgccacccatgcatccttcgtaactcagcagGTTAACTGAATATTGTGATCTGCAGTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTGCGCGCACTCAGCATGTCTGTCCTC-------------------------
||||| ||  ||||| ||||   ||  || |  |||| | ||    || ||| |||| | | | |  || ||   | ||||||| |||  || ||||||||||||||||||||||||||||||| ||||| ||||| || || || || || |||||||||||||| |||||                          
gcatgtcc--tcttc-tctgatctcactcacgttcatgccaaacttactcat-catcatccatgatccatcatcctgactgaatcttg--atatgcagTGCCGTCTATCAACCACCATCCGCTGTCTTTCGCACCCCAGCGCGCATGTCCGTGCACTCAGCATGTCCGTCCTTCGCGACATCTTGAACAGCGGACAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211161328|gb|FL392793.1|FL392793
EST:     GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAG                         GTTAACTGAATATTGTGATCTGCAGTGCCGTCTATCAACCACCATCCGCTG
genomic: GGGGAGATTCAGGTTTATCAGTTGCAGATGGTCTTTCAAATCTGCTGAAGgcatgccccg ... aactcagcagGTTAACTGAATATTGTGATCTGCAGTGCCGTCTATCAACCACCATCCGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccttcgttctcactcattcaaacgccacccatgcatccttcgtaactcagcagGTTAACTGAATATTGTGATCTGCAGTGCCGTCTATCAACCACCATCCGCTGCCTTTCTCACCCAAGTGCACACGTGCGCGCACTCAGCATGTCTGTCCTC
                                         tcgtaac  putative branch site (score: 2)
                 attcaaa  TA-rich tract