1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...taacacatagttgatggtttgaaaactttacattggatggttattaatgagttggatgatagaccacttaatttctctaaaatcttttctcttgttgtagGGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTG
species | Zea mays |
transcript | GRMZM2G104377_T03 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACNNNNNNNGGAAG GGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTGEST: gi|5296168|gb|AI783043.1|AI783043
genomic: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACAAAAAAAGGAAGgtatatcttc ... cttgttgtagGGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTG
EST: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACNNNNNNNGGAAG GGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTGEST: gi|60351693|gb|DN218666.1|DN218666
genomic: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACAAAAAAAGGAAGgtatatcttc ... cttgttgtagGGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTG
EST: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACNNNNNNNGGAAG GGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTGEST: gi|211204845|gb|FL182852.1|FL182852
genomic: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACAAAAAAAGGAAGgtatatcttc ... cttgttgtagGGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTG
EST: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACNNNNNNNGGAAG GGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTGEST: gi|19058452|gb|BM737119.1|BM737119
genomic: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACAAAAAAAGGAAGgtatatcttc ... cttgttgtagGGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTG
EST: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACNNNNNNNGGAAG GGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTGEST: gi|31353499|gb|CD437856.1|CD437856
genomic: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACAAAAAAAGGAAGgtatatcttc ... cttgttgtagGGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTG
EST: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACNNNNNNNGGAAG GGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTG
genomic: ACTTTGTACTAGCGATTGAAGTCCAGCCTCTGGATGACAAAAAAAGGAAGgtatatcttc ... cttgttgtagGGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTG
aatgagttggatgatagaccacttaatttctctaaaatcttttctcttgttgtagGGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTG
tcttttctcttgttgt CT-rich tract
ttaatttctctaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacacatagttgatggtttgaaaactttacattggatggttattaatgagttggatgatagaccacttaatttctctaaaatcttttctcttgttgtagGGCGAGATTGTGAAGGTTTATGCTAATGATCAAAGAAAAATTACATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-aacacat
- - - - -gttgatg
- - - - - - - - - - - - - - - - ttggatg
- - - - - - - - - - - - - - - - -tggatgg