Sequence
atgc intronic sequence ATGC exonic sequencegtatgtgatctagattgtatccaatcctggttcgcttcagcttcgaagtggttgttgaaatagcctttggatgatcattgcagTTCCAGAGAGAGGTCAGAACAGTCTCTTGTTAGATGGGCTACCCCTCAACTTCATGATATTGATGCACTTGCTAGGATGGTTGATCCAGCATTAAACGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os02g09740.2 (Oryza sativa), 3'ss of exon 14
gtatgtgatctagattgtatccaa-tcctggttcgcttcagcttcgaagtggttgttgaaatagcctttggatgatcattgcagTTCCAGAGAGAGGTCAGAACAGTCTCTTGTTAGATGGGCTACCCCTCAACTTCATGATATTGATGCACTTGCTAGGATGGTTGATCCAGCATTAAACGGA
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gtatgct-tctagtttatattcaaatcccggtgcattgcgttttataaattg-----aaaatgaccttctgatggatattgcagTTCTAGAGAGAGATCAGAACAATCTCTTGTTCGATGGGCTACTCCACAGCTTCATGATATCGATGCGCTTGCTAAGATGGTGGATCCAGCATTAAATGGA
upper sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 14
lower sequence: Vv10s0116g00100.t01 (Vitis vinifera), 3'ss of exon 14
--------------------------------gtatgtgatctaga----ttgtatc-caatcctggttcgcttcagcttcgaa-gtggttgttgaaatagcctttggatgatcattgcagTTCCAGAGAGAGGTCAGAACAGTCTCTTGTTAGATGGGCTACCCCTCAACTTCATGATATTGATGCACTTGCTAGGATGGTTGATCCAGCATTAAACGGA
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gtagaacatgtgctacattgctgaacacccatttttgtgttcttgaaatattttatagcattctttaatctcttgacattggtttgtttctatggttctcatcttcttttttgtgttttagTTCAAGAGTGAGATCAGAACAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATAGATGCCCTGGCAAAAATGGTTGATCCTTCCCTAAATGGC
upper sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 14
lower sequence: Vv10s0116g00050.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------------gtatgtgatctaga----ttgtatccaatcctggttcgcttcagcttcgaagtggtt--gttgaaatagcctttggatgatcattgcagTTCCAGAGAGAGGTCAGAACAGTCTCTTGTTAGATGGGCTACCCCTCAACTTCATGATATTGATGCACTTGCTAGGATGGTTGATCCAGCATTAAACGGA
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gtagaacatgtgctacattgctgaacacccatttttgtgttcttgaaatattttatagcattctttaatctctggacattggtttgtttctatggttctcatcttcttttttgtgttttagTTCAAGAGTGAGATCAGAACAGTCACTTGTGAGATGGGCTACTCCCCAACTTCATGATATAGATGCCCTGGCAAAAATGGTTGATCCTTCCCTAAATGGC
upper sequence: GRMZM2G103070_T01 (Zea mays), 3'ss of exon 14
lower sequence: PP1S64_28V6.2 (Physcomitrella patens), 3'ss of exon 15
----------gtatgtgatctagattgtatccaatcctggttcgcttcagcttcgaagtggttgttgaaatagcct---ttggatgatcattg------cagTTCCAGAGAGAGGTCAGAACAGTCTCTTGTTAGATGGGCTACCCCTCAACTTCATGATATTGATGCACTTGCTAGGATGGTTGATCCAGCATTAAACGGA
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catcctcgtaaaatataacct-gatcactttttccggcactttgctttctatcctat-cagtcataagtatgtcctaacctggtgaacccttggacccgcagCTCAAGACCAAGATCCGAGCAAAACCTGGTGCGATGGGCAACACCACAACTGCATGATATTGATGCACTCGCAAGAATGGTGGATCCAGCGTTAGAGGGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttcgcttcagcttcgaagtggttgttgaaatagcctttggatgatcattgcagTTCCAGAGAGAGGTCAGAACAGTCTCTTGTTAGATGGGCTACCCCTCAACTTCATGATATTGATGCACTTGCTAGGATGGTTGATCCAGCATTAAACGGA
ttgaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtgatctagattgtatccaatcctggttcgcttcagcttcgaagtggttgttgaaatagcctttggatgatcattgcagTTCCAGAGAGAGGTCAGAACAGTCTCTTGTTAGATGGGCTACCCCTCAACTTCATGATATTGATGCACTTGCTAGGATGGTTGATCCAGCATTAAACGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG