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gtattgtttttattaatatatcacttacctgacatataaacatttatataacagcaactactgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
species | Zea mays |
transcript | GRMZM2G101250_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAG GACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTGEST: gi|148934268|gb|EC878291.2|EC878291
genomic: TGATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAGgtattgtttt ... ctgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
EST: TGATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAG GACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTGEST: gi|78121627|gb|DV540011.1|DV540011
genomic: TGATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAGgtattgtttt ... ctgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
EST: TGATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAG GACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTGEST: gi|40302924|gb|CK347311.1|CK347311
genomic: TGATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAGgtattgtttt ... ctgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
EST: T-ATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAG GACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTGEST: gi|60358880|gb|DN225853.1|DN225853
genomic: TGATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAGgtattgtttt ... ctgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
EST: TGATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAG GACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTGEST: gi|32834623|gb|CD974301.1|CD974301
genomic: TGATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAGgtattgtttt ... ctgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
EST: ACTTTCAACAG GACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTGEST: gi|32930313|gb|CF035125.1|CF035125
genomic: ACTTTCAACAGgtattgtttt ... ctgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
EST: ACTTTCAACAG GACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTGEST: gi|32833197|gb|CD972875.1|CD972875
genomic: ACTTTCAACAGgtattgtttt ... ctgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
EST: GTACTTTCAACAG GACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTGEST: gi|91056340|gb|EB166758.1|EB166758
genomic: GTACTTTCAACAGgtattgtttt ... ctgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
EST: TGATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAG GACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
genomic: TGATAACATTGGCCTCGTAGAGGCCATTATTAGTAGTGTACTTTCAACAGgtattgtttt ... ctgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
atatatcacttacctgacatataaacatttatataacagcaactactgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
tactgat putative branch site (score: 7)
tgacatataaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgtttttattaatatatcacttacctgacatataaacatttatataacagcaactactgattgcagGACGTGTTGACCTTCAAAAGAAGCTGTTTGGTAGCATTCAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT