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...tgttttttggaccctacatcatagaaaggcgtagcgtccaggcgtcttccttcattattaccttaatttttactagtgtactaagctttgtttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTGGAGGATGTCCGTGCCACAGGCCAGGCTGCTGGTACATCCAGCACTGCC
species | Zea mays |
transcript | GRMZM2G100913_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAEST: gi|31355723|gb|CD440080.1|CD440080
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGA
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|149040127|gb|EE046778.2|EE046778
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|31909111|gb|CD650755.1|CD650755
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|24770194|gb|CA405323.1|CA405323
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: CTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|67010842|gb|CO439591.1|CO439591
genomic: CTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|211250418|gb|FL206019.1|FL206019
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|18173237|gb|BM348625.1|BM348625
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|31364271|gb|CD448626.1|CD448626
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|29543802|gb|CB604182.1|CB604182
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: ACAGGGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|30087943|gb|CB886148.1|CB886148
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|31363870|gb|CD448225.1|CD448225
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|211250419|gb|FL206020.1|FL206020
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|31909581|gb|CD650990.1|CD650990
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: TGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTEST: gi|211250420|gb|FL206021.1|FL206021
genomic: TGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
EST: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAG CGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
genomic: ACAGTGGCTGAATTTGGTGAATTCCGCGTGAAGCTTGCTGGACTTACAAGgtagtaaatt ... tttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTT
cttccttcattattaccttaatttttactagtgtactaagctttgtttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTGGAGGATGTCCGTGCCACAGGCCAGGCTGCTGGTACATCCAGCACTGCC
ccttaat putative branch site (score: 103)
ctttgttt putative PPT
ttcattattaccttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttttggaccctacatcatagaaaggcgtagcgtccaggcgtcttccttcattattaccttaatttttactagtgtactaagctttgtttactgcagCGTGACTCGGAATTACTTTGAGAACCTTGTTCAAGCTTTGGAAGCTGGGTTGGAGGATGTCCGTGCCACAGGCCAGGCTGCTGGTACATCCAGCACTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
tgttttt
- - - - - -ccctaca
- - - - - - - - - -catagaaa
- - - - - - - - - - - - - - - - - - tccaggc