1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaactagtatttattagattgcacaaattcagttgttcactgctagtgcttaaaagctgtttgctgtttttcttgcagGCTCTTGACCTGAAAAAGCTACAAACACCTTTGTATGAGGAGTTCTACAACACTGTGCATGGAGGGAGTTTTCAGGGAGCTGATCAAACTTCCAAGGGAA
species | Zea mays |
transcript | GRMZM2G098828_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATGATGATGTACTTACAGAGTCAAAAATAAAGGCATTTCTTGAGGAGAAG GCTCTTGACCTGAAAAAGCTACAAACACCTTTGTATGAGGAGTTCTACAACEST: gi|20208111|gb|BQ134215.1|BQ134215
genomic: ATGATGATGTACTTACAGAGTCAAAAATAAAGGCATTTCTTGAGGAGAAGgtaactagta ... tttcttgcagGCTCTTGACCTGAAAAAGCTACAAACACCTTTGTATGAGGAGTTCTACAAC
EST: ATGATGATGTACTTACAGAGTCAAAAATAAAGGCATTTCTTGAGGAGAAG GCTCTTGACCTGAAAAAGCTACAAACACCTTTGTATGAGGAGTTCTACAACEST: gi|4572997|gb|AI586646.1|AI586646
genomic: ATGATGATGTACTTACAGAGTCAAAAATAAAGGCATTTCTTGAGGAGAAGgtaactagta ... tttcttgcagGCTCTTGACCTGAAAAAGCTACAAACACCTTTGTATGAGGAGTTCTACAAC
EST: ATGATGATGTACTTACAGAGTCAAAAATAAAGGCATTTCTTGAGGAGAAG GCTCTTGACCTGAAAAAGCTACAAACACCTTTGTATGAGGAGTTCTACAACEST: gi|4573006|gb|AI586655.1|AI586655
genomic: ATGATGATGTACTTACAGAGTCAAAAATAAAGGCATTTCTTGAGGAGAAGgtaactagta ... tttcttgcagGCTCTTGACCTGAAAAAGCTACAAACACCTTTGTATGAGGAGTTCTACAAC
EST: ATGATGATGTACTTACAGAGTCAAAAATAAAGGCATTTCTTGAGGAGAAG GCTCTTGACCTGAAAAAGCTACAAACACCTTTGTATGAGGAGTTCTACAAC
genomic: ATGATGATGTACTTACAGAGTCAAAAATAAAGGCATTTCTTGAGGAGAAGgtaactagta ... tttcttgcagGCTCTTGACCTGAAAAAGCTACAAACACCTTTGTATGAGGAGTTCTACAAC
caaattcagttgttcactgctagtgcttaaaagctgtttgctgtttttcttgcagGCTCTTGACCTGAAAAAGCTACAAACACCTTTGTATGAGGAGTTCTACAACACTGTGCATGGAGGGAGTTTTCAGGGAGCTGATCAAACTTCCAAGGGAA
tttgctgtttttctt CT-rich tract
tttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactagtatttattagattgcacaaattcagttgttcactgctagtgcttaaaagctgtttgctgtttttcttgcagGCTCTTGACCTGAAAAAGCTACAAACACCTTTGTATGAGGAGTTCTACAACACTGTGCATGGAGGGAGTTTTCAGGGAGCTGATCAAACTTCCAAGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT