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gtaaggacacaacaccttgagggagtgcctaagtgacatgacacaatgctagtcccttttcagtttccactgaacacgaacagtatcctcttctcgttttaacttcatatctgtttacttctgctatgagcttcaacaacccacataatctgaaaagagaacgtttgaaatcagGTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCCCAACTATTGGATGCTACACTTCTTCAAGGAATCTAGCGGCGCCACCCTC
species | Zea mays |
transcript | GRMZM2G097277_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTTGAGATGGCAAGCTGTGCACCCCTTTTTGTAAATGACAATGATCGCAG GTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCCEST: gi|71757746|gb|DR955683.1|DR955683
genomic: GTTGAGATGGCAAGCTGTGCACCCCTTTTTGTAAATGACAATGATCGCAGgtaaggacac ... ttgaaatcagGTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCC
EST: GTTGAGATGGCAAGCTGTGCACCCCTTTTTGTAAATGACAATGATCGCAG GTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCCEST: gi|67026679|gb|CO455428.1|CO455428
genomic: GTTGAGATGGCAAGCTGTGCACCCCTTTTTGTAAATGACAATGATCGCAGgtaaggacac ... ttgaaatcagGTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCC
EST: GTTGAGATGGCAAGCTGTGCACCCCTTTTTGTAAATGACAATGATCGCAG GTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCCEST: gi|71757747|gb|DR955684.1|DR955684
genomic: GTTGAGATGGCAAGCTGTGCACCCCTTTTTGTAAATGACAATGATCGCAGgtaaggacac ... ttgaaatcagGTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCC
EST: GTTGAGATGGCAAGCTGTGCACCCCTTTTTGTAAATGACAATGATCGCAG GTGGAGCCCAGATGCCATCGTCTTCTACTCGGGGCAGCACTATGGGTGTCCEST: gi|71762148|gb|DR960085.1|DR960085
genomic: GTTGAGATGGCAAGCTGTGCACCCCTTTTTGTAAATGACAATGATCGCAGgtaaggacac ... ttgaaatcagGTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCC
EST: GTTGAGATGGCAAGCTGTGCACCCCTTTTTGTAAATGACAATGATCGCAG GTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCC
genomic: GTTGAGATGGCAAGCTGTGCACCCCTTTTTGTAAATGACAATGATCGCAGgtaaggacac ... ttgaaatcagGTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCC
tctgctatgagcttcaacaacccacataatctgaaaagagaacgtttgaaatcagGTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCCCAACTATTGGATGCTACACTTCTTCAAGGAATCTAGCGGCGCCACCCTC
tttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggacacaacaccttgagggagtgcctaagtgacatgacacaatgctagtcccttttcagtttccactgaacacgaacagtatcctcttctcgttttaacttcatatctgtttacttctgctatgagcttcaacaacccacataatctgaaaagagaacgtttgaaatcagGTGGAGCCCAGATGCCATCGTCTTCAACTCGGGGCAGCACTATGGGTGTCCCAACTATTGGATGCTACACTTCTTCAAGGAATCTAGCGGCGCCACCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA