Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgtgagtcacgacttcaattgtttacacagttataagctttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 3'ss of exon 15
gtaaaaatagtctactccttg-aaaacgttttcttctgtttaagttctctatatggccactttgtgagtcacgacttcaattgtttacacagttataagctttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
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gtatatattgtgtgctccatgcaagaatttttattttgttaatgtattttctattgtagtattttgtgc----actacaa--atttatcccgttgta-------catttacagGTCACCACGATGTATCACTTGGATCGCCCTATGTACTTGTTGGGATATCTAGCGAATCAAAGCCGAGTTTATCTTATTGACAAGGAATTCAA
upper sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 15
lower sequence: GLYMA08G22140.1 (Glycine max), 3'ss of exon 15
----------------------------------------gtaaaaatagtctactccttgaaaacgttttcttct---gtt--taagttctctatatggccactttgtgagtcacgac--ttcaattgtttacacagttataa-gctttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
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gtatttactcttttcccttttagattctaaagagctccatatttatttattgaactctttgttatcatcttttctttgtgttgatgaatttcttatatgtatatttattgaactacaaggatcatacaattcctgttgatgcattacattatgaatttagGTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATGGACAAAGAATTCAA
upper sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 15
lower sequence: GLYMA13G43680.1 (Glycine max), 3'ss of exon 15
gtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgt-gagtcacgacttcaattgtttacacagtt--ataagctttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
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gtattaactcttttcccttctagat--ttctagtttaaaaaagaattgtgcattcttttttaattgaactacaaggatcatgagacatcttgatgcataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
upper sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 15
lower sequence: GLYMA07G03890.2 (Glycine max), 3'ss of exon 4
----------------------------------------gtaaaaatagtctactccttgaaaacgttttct-----tctgtttaagttctctatatggccactttgtgagtcacgac--ttcaattgtttacacagttataa-gctttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
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gtatttatacttttcccttttagattcaaaagagctctgtatttatttattgaactctcggtaatcatcttttctttgtcttcatgaatttcttatatgtatatttattgaactacaaggatcatacaattcctgttgttgcattacattatggatttagGTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATAGACAAAGAATTCAA
upper sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 15
lower sequence: GLYMA15G01680.1 (Glycine max), 3'ss of exon 15
gtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgtgagtcacgacttcaattgtttacacagttataagct--ttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
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gtattaactcttttc-ccttctagatttctagtttaaaaaaagaattgtgcattctttttaattgaactacgaggatcatgagacatcttgatacataatgattatgaatttagGTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAA
upper sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 15
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 3'ss of exon 19
gtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgtgagtcacgacttcaattgtttacacagtt--ataagctttgtac-ttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
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--------------------------gtaaggctcatttctaggtttttggaaagaaacgttttatgttttttattttgttgtaattgagattcagtactcctcttatattacagGTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAA
upper sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 15
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 3'ss of exon 15
gtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgtga--gtcacgacttcaattgtttacacagttataagctttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
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-----------------------------gtattgtgcatatatgttggttactctgatttggaagttgttatgaactggattctaatgatggttgctaacatcgtaatactagGTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTGGGATATCTTGCAAGTCAAAGTCGGGTTTTCTTGGTAGACAAAGAATTCAA
upper sequence: GRMZM2G095348_T03 (Zea mays), 3'ss of exon 15
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 15
gtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgtgagtcacgacttcaattgtttacacagttataagctttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
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----------------gtataagagagttgattccaggttgtatt-tctatatatatgatct-tcattctaaggtgcagtcatata---aattgttaatgtgatgatttcagGTAACCACCATGTTTCACTTGGACCGGCCTATGTATTTGTTAGGATATCTTGCCAGTCAAAGTCGCGTTTATCTTATAGACAAAGAGTTTAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32940662|gb|CF045481.1|CF045481EST: TTATCTATAACAACTCGTTGTGGCGCCTAAATTATTGTGTTGGTGGTGAG GTCACTACAATGTATCATTTGGATCGCCCTATGTA
genomic: TTATCTATAACAACTCGTTGTGGCGCCTAAATTATTGTGTTGGTGGTGAGgtaaaaatag ... gtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.actttgtgagtcacgacttcaattgtttacacagttataagctttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
aattgttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaatagtctactccttgaaaacgttttcttctgtttaagttctctatatggccactttgtgagtcacgacttcaattgtttacacagttataagctttgtacttacagGTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG