1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagcatttgtgggtgacaattctcatgtttttagcgaggttccattatttttactgtgcacgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCCCAGCAGATCCTGGAGCACCTTGAACTGAATACCTACTATCCTGTTTTTG
species | Zea mays |
transcript | GRMZM2G092776_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC GTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCCEST: gi|6538838|gb|AW224977.1|AW224977
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC GTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCCEST: gi|6865071|gb|AW360421.1|AW360421
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC GTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCCEST: gi|76284884|gb|DV024452.1|DV024452
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC GTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCCEST: gi|50325910|gb|CO521036.1|CO521036
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC GTGGATGTTACCGGGCTTGTTGATGGCCATTTTTTGTACCTGTCAGCTGCCEST: gi|83279442|gb|DV943450.1|DV943450
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC GTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCCEST: gi|91877534|gb|EB407491.1|EB407491
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC GTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCCEST: gi|149005260|gb|EE039807.2|EE039807
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
EST: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAAC GTGGATGTTACCGGGCTTGTTGATGGCCATTTTTTGTACCTGTCAGCTGCC
genomic: CCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcattt ... cgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCC
acaattctcatgtttttagcgaggttccattatttttactgtgcacgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCCCAGCAGATCCTGGAGCACCTTGAACTGAATACCTACTATCCTGTTTTTG
ttccattattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatttgtgggtgacaattctcatgtttttagcgaggttccattatttttactgtgcacgatttacagGTGGATGTTACCGGGCTTGTTGATGGCCATTCTTCGTACCTGTCAGCTGCCCAGCAGATCCTGGAGCACCTTGAACTGAATACCTACTATCCTGTTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA