1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtttactagctgaactttttaatttcactacttgtgagttgtgggaatatgcatgtcctgattcactctgaagtttgttttcagTTCTTGGTTGTGATGGCAATATGCACCAACTGCTTGCTTCTCGTTTGTCTGTATGACGAGGAGGGGAAATGGAGGATTGAGCCAGGACTAGCAGCAATCC
species | Zea mays |
transcript | GRMZM2G091494_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTGAGCCGCGTGCTGCAGCTACAATTGGAGCATGGTTGAACATATTCCAG TTCTTGGTTGTGATGGCAATATGCACCAACTGCTTGCTTCTCGTTTGTCTGEST: gi|89253164|gb|DY624950.1|DY624950
genomic: CTGAGCCGCGTGCTGCAGCTACAATTGGAGCATGGTTGAACATATTCCAGgtttactagc ... ttgttttcagTTCTTGGTTGTGATGGCAATATGCACCAACTGCTTGCTTCTCGTTTGTCTG
EST: CTGAGCCGCGTGCTGCAGCTACAATTGGAGCATGGTTGAACATATTCCAG TTTGTTTTCAGTTCTTGGTTGTGATGGCAATATGCACCAACTGCTTGCTTC
genomic: CTGAGCCGCGTGCTGCAGCTACAATTGGAGCATGGTTGAACATATTCCAGgtttactagc ... ttgttttcagTT------C--TT---GGTTGTGATGGCAATATGCACCAACTGCTTGCTTC
acttgtgagttgtgggaatatgcatgtcctgattcactctgaagtttgttttcagTTCTTGGTTGTGATGGCAATATGCACCAACTGCTTGCTTCTCGTTTGTCTGTATGACGAGGAGGGGAAATGGAGGATTGAGCCAGGACTAGCAGCAATCC
tcctgat putative branch site (score: 78)
tttgttttc putative PPT
tttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttactagctgaactttttaatttcactacttgtgagttgtgggaatatgcatgtcctgattcactctgaagtttgttttcagTTCTTGGTTGTGATGGCAATATGCACCAACTGCTTGCTTCTCGTTTGTCTGTATGACGAGGAGGGGAAATGGAGGATTGAGCCAGGACTAGCAGCAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT