1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttcatttttggtattttgaaaacaacgtcctacatagccgatggttgatccactgctgctgacttgttcttggcgtacttgttccttggctgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGCTGCACAGCTGGTGCAAGAGGGTTAAGGACAGGAGCCGACACAATCCGC
species | Zea mays |
transcript | GRMZM2G089259_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|60401508|gb|DN234315.1|DN234315
genomic: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: GTTTTGGTGC-GCTACAGCACACTGGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|71428022|gb|DR809072.1|DR809072
genomic: GTTTTGGTGCAGCTACAGCACACT-GCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|60338197|gb|DN205170.1|DN205170
genomic: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|76012906|gb|DT940076.1|DT940076
genomic: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|50336815|gb|CO531941.1|CO531941
genomic: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|28987033|gb|CB351431.1|CB351431
genomic: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|148994787|gb|EE034232.2|EE034232
genomic: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|60395967|gb|DN228837.1|DN228837
genomic: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: GTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|71329463|gb|DR801452.1|DR801452
genomic: GTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|29129794|gb|CB380498.1|CB380498
genomic: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|71321199|gb|DR797301.1|DR797301
genomic: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGEST: gi|50337270|gb|CO532396.1|CO532396
genomic: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
EST: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAG ATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
genomic: AGTTTTGGTGCAGCTACAGCACACTGCCGCTGAATGTGATTATTTCTCAGgtactcttca ... tgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCG
tgatccactgctgctgacttgttcttggcgtacttgttccttggctgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGCTGCACAGCTGGTGCAAGAGGGTTAAGGACAGGAGCCGACACAATCCGC
tcttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatttttggtattttgaaaacaacgtcctacatagccgatggttgatccactgctgctgacttgttcttggcgtacttgttccttggctgatcttcagATGGGTTCCAAGTTCAAGAAATCACTGGTCTCGGAGAACGTGAGGGAGTCGCTGCACAGCTGGTGCAAGAGGGTTAAGGACAGGAGCCGACACAATCCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG