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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttccaagaatccagtgggtgtgtatttgcaaggctgcttgagagtagtttaacttattcttgcactccctccctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG

Basic information

species Zea mays
transcript GRMZM2G086489_T02
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086489_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os04g55960.1 (Oryza sativa), 3'ss of exon 14
gtttgttttccaagaatccagtgggtgtgtatttgcaaggctgcttgagagtagtttaacttattcttgcactccctccctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG
||||||||||| | |      |   ||| || ||   |       ||    ||||  |||||  |||   | |    |   |    |||||||| |||||  | ||||||||||| |  ||| |||||| |||| | || |||||||||||||||||||||||||||
gtttgttttcccaaatcttcatttctgtttactttggatttgagatggccctagt--aactttatctgttatttatgcttgct---cagGAAAGATTAGCTCTAAAACAATCTGGAGTTGAACTGGGCAATTCAGTTCTCTTCTTTGGATGCAGGAACCGTAATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22491259|gb|BU051182.1|BU051182
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|33102735|gb|CF062695.1|CF062695
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|211465903|gb|FL134195.1|FL134195
EST:     TCATGATTGGTCCTGGGACA-GGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|211465904|gb|FL134196.1|FL134196
EST:     TCATGATTGGTCCTGGGACA-GGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|32943853|gb|CF048672.1|CF048672
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|15499663|gb|BI596176.1|BI596176
EST:     CTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGG-TAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: CTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|67026638|gb|CO455387.1|CO455387
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|32929783|gb|CF034595.1|CF034595
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GANAGGTTAGCATTGAAACAATC
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATC
EST: gi|15632677|gb|BI679770.1|BI679770
EST:     TGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|211465906|gb|FL134198.1|FL134198
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|32835080|gb|CD974758.1|CD974758
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|32832265|gb|CD971943.1|CD971943
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|67033233|gb|CO461982.1|CO461982
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|19437266|gb|BM953676.1|BM953676
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|31351811|gb|CD436168.1|CD436168
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
EST: gi|32835719|gb|CD975397.1|CD975397
EST:     TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAG                         GAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT
genomic: TCATGATTGGTCCTGGGACAGGGCTGGCTCCTTTTAGAGGCTTCTTGCAGgtttgttttc ... ctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaggctgcttgagagtagtttaacttattcttgcactccctccctcctggcagGAAAGGTTAGCATTGAAACAATCTGGGGCAGAATTGGGCACTTCAATCCTTTTCTTTGGATGCAGGAACCGTAATATG
                   gtttaac  putative branch site (score: 3)
                         cttattcttgcactcc  CT-rich tract
                 tagtttaacttatt  TA-rich tract