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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgcaaggtaaaatttacaatttgatgtgtggttgtatgcccttctacggttgtttttaataccactccaggtattaatttttattacccccaacacagATACATGCTACCCTTCCCCGTCTGATCCTCCATCTTCACGATGATGACCTAAGTGTTCGTCTTGCCTGTCGG

Basic information

species Zea mays
transcript GRMZM2G086093_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086093_T03 (Zea mays), 3'ss of exon 17
lower sequence: LOC_Os03g05330.1 (Oryza sativa), 3'ss of exon 25
--------------------------------------------------------------------------actgcaaggtaaaatttacaatttgatgtgtggttgtatgcccttctacggttgtttttaataccactccaggtattaatttttattacccccaacacagATACATGCTACCCTTCCCCGTCTGATCCTCCATCTTCACGATGATGACCTAAGTGTTCGTCTTGCCTGTCGG
                                                                          |||||         |  |  |  || |  || ||| |      || |    | ||| |   |   | ||     |  ||||    || ||||     ||||| ||||| || ||||| ||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||
gtagtagcatgcaaagtcagcttttagtgtgttattagcagtgcgctgctatcttgcaagccatcttatagggcactgctgtaatggttgcaggaagtgctaagtagttttggattattttcttat-gttatgtgtgttaatctgttaacaaattc--gttgcccctgttgcagATTCATGCCACTCTTCCTCGCTTGATCCTCCATCTTCACGATGATGACCTAAGCGTTCGCCTTGCCTGTCGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67021578|gb|CO450327.1|CO450327
EST:     CTTTAAGTGCATATGGTGTTGGTTTGCAGCGCACTGCTTTTATTGAGCAG                         ATACATGCTACCCTTCCCCGTCTGATCCTCCATCTTCACGATGATGACCTA
genomic: CTTTAAGTGCATATGGTGTTGGTTTGCAGCGCACTGCTTTTATTGAGCAGgtgagcatac ... cccaacacagATACATGCTACCCTTCCCCGTCTGATCCTCCATCTTCACGATGATGACCTA
EST: gi|67025348|gb|CO454097.1|CO454097
EST:     CTTTAAGTGCATATGGTGTTGGTTTGCAGCGCACTGCTTTTATTGAGCAG                         ATACATGCTACCCTTCCCCGTCTGATCCTCCATCTTCACGATGATGACCTA
genomic: CTTTAAGTGCATATGGTGTTGGTTTGCAGCGCACTGCTTTTATTGAGCAGgtgagcatac ... cccaacacagATACATGCTACCCTTCCCCGTCTGATCCTCCATCTTCACGATGATGACCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacggttgtttttaataccactccaggtattaatttttattacccccaacacagATACATGCTACCCTTCCCCGTCTGATCCTCCATCTTCACGATGATGACCTAAGTGTTCGTCTTGCCTGTCGG
                            tattaat  putative branch site (score: 2)
                                  tttttattaccccc  CT-rich tract
                         aggtattaatttttat  TA-rich tract