1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagctccagcttcgaattgacttttctgtcgactggattatgaaaagatactcacttcatgacttgtgctgcagGTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATCCCCACCAGGGACAACAAGTGTCTATATCAAAATTTTATTGCTGGAGTTG
species | Zea mays |
transcript | GRMZM2G076394_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CAGATTATCCGATGCTTAACTTTTTGCTTACTACGACGATATTTCTGTCG GTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATCEST: gi|12968792|gb|BG265828.1|BG265828
genomic: CAGATTATCCGATGCTTAACTTTTTGCTTACTACGACGATATTTCTGTCGgtaagctcca ... tgtgctgcagGTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATC
EST: CAGATTATCCGATGCTTAACTTTTTGCTTACTACGACGATATTTCTGTCG GTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATCEST: gi|6056529|gb|AW090919.1|AW090919
genomic: CAGATTATCCGATGCTTAACTTTTTGCTTACTACGACGATATTTCTGTCGgtaagctcca ... tgtgctgcagGTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATC
EST: CAGATTATCCGATGCTTAACTTTTTGCTTACTACGACGATATTTCTGTCG GTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATCEST: gi|5929073|gb|AW056365.1|AW056365
genomic: CAGATTATCCGATGCTTAACTTTTTGCTTACTACGACGATATTTCTGTCGgtaagctcca ... tgtgctgcagGTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATC
EST: CAGATTATCCGATGCTTAACTTTTTGCTTACTACGACGATATTTCTGTCG GTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATCEST: gi|5525684|gb|AI861577.1|AI861577
genomic: CAGATTATCCGATGCTTAACTTTTTGCTTACTACGACGATATTTCTGTCGgtaagctcca ... tgtgctgcagGTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATC
EST: CAGATTATCCGATGCTTAACTTTTTGCTTACTACGACGATATTTCTGTCG GTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATC
genomic: CAGATTATCCGATGCTTAACTTTTTGCTTACTACGACGATATTTCTGTCGgtaagctcca ... tgtgctgcagGTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATC
acttttctgtcgactggattatgaaaagatactcacttcatgacttgtgctgcagGTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATCCCCACCAGGGACAACAAGTGTCTATATCAAAATTTTATTGCTGGAGTTG
tactcac putative branch site (score: 1)
attatgaaaagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctccagcttcgaattgacttttctgtcgactggattatgaaaagatactcacttcatgacttgtgctgcagGTATCATTCCGGGTGTTTAAGCTCACAAACGTACTGAAAGAGGCATTTATCCCCACCAGGGACAACAAGTGTCTATATCAAAATTTTATTGCTGGAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA