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...acagttccgatcatggcgtgtgactttatttcggagtctggatgattggcacaacccaaaagttttttatgcacttataagagtatgtgttgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATCAAGATGCTCGCCACGATCACACTGGTCATGGCTCCCATATTCTTGTGA
species | Zea mays |
transcript | GRMZM2G075900_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|211461668|gb|FL297429.1|FL297429
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|211253087|gb|FL453188.1|FL453188
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|211464187|gb|FL297438.1|FL297438
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|211461670|gb|FL297431.1|FL297431
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|211464186|gb|FL297437.1|FL297437
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|21706297|gb|BQ635346.1|BQ635346
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|211464184|gb|FL297435.1|FL297435
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|241994846|gb|GR421190.1|GR421190
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|211461665|gb|FL297426.1|FL297426
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|211464181|gb|FL297432.1|FL297432
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGATACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|211464185|gb|FL297436.1|FL297436
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|211464183|gb|FL297434.1|FL297434
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|60349341|gb|DN216314.1|DN216314
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATEST: gi|211461667|gb|FL297428.1|FL297428
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
EST: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACAC GGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
genomic: CTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACgtaagtttct ... tgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTAT
ttggcacaacccaaaagttttttatgcacttataagagtatgtgttgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATCAAGATGCTCGCCACGATCACACTGGTCATGGCTCCCATATTCTTGTGA
aaaagttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagttccgatcatggcgtgtgactttatttcggagtctggatgattggcacaacccaaaagttttttatgcacttataagagtatgtgttgtgctgcagGGTTGGAGACCCATTCAAAGACACTGCAGGACCATCGCTGCACGTTCTTATCAAGATGCTCGCCACGATCACACTGGTCATGGCTCCCATATTCTTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - -gcgtgtg
- - - - - - - - - - - - - - - - - - -ctggatg
- - - - - - - - - - - - - - - - - - - - - - - - -cacaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgtg