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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctgtttaactatgaacatactaaaagcgtgtggctccgacgagtaccatattccgtcgtgtacatcacccttgcaaagatactcctagaggctatatccaaatttctaaagcaacataacagtccttagtgaatcagtgatcactgtattttatttttattttttgccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGATCCGCACCGCACTTCAAGACGCTGCAAG

Basic information

species Zea mays
transcript GRMZM2G074790_T02
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211267531|gb|FL446292.1|FL446292
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCGAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|5688540|gb|AI941555.1|AI941555
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCGAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|67028320|gb|CO457069.1|CO457069
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATTAAGGCCGGCATCATCGATCCGGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|5006206|gb|AI712268.1|AI712268
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCGAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|31997582|gb|CD661667.1|CD661667
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|76911014|gb|DV164129.1|DV164129
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|211181730|gb|FL012621.1|FL012621
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCGAGGCCGGCATCATCGATCCCGTGAAGG
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGG
EST: gi|211184128|gb|FL012625.1|FL012625
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|60394409|gb|DN227279.1|DN227279
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|24764724|gb|CA399887.1|CA399887
EST:     GAAGCTGATTGAACAAGAGGGCCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|149072567|gb|EE044214.2|EE044214
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGTTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|74242337|gb|DT650251.1|DT650251
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|8666121|gb|BE186937.1|BE186937
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCGAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|61118980|gb|DN559941.1|DN559941
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|71759820|gb|DR957757.1|DR957757
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|78117876|gb|DV536263.1|DV536263
EST:     GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGTTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
EST: gi|31352804|gb|CD437161.1|CD437161
EST:     GAAGCTGATTGAACAAGAGGGCCTCAGTTTGGGCTATGATGCAGCAAAAG                         GGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA
genomic: GAAGCTGATTGAACAAGAGGACCTCAGTTTGGGCTATGATGCAGCAAAAGgtttgttctg ... ccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccttagtgaatcagtgatcactgtattttatttttattttttgccaactgcagGGGAGTACGTAGACATGATCAAGGCCGGCATCATCGATCCCGTGAAGGTGATCCGCACCGCACTTCAAGACGCTGCAAG
                                tttttattttttgcc  CT-rich tract
                tgatcactgtatttta  TA-rich tract