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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgttggtgctgcatatgcagcataaactcctccgaactctcttcttttttgcaaagagccttgttctttcagaggtggactaagatggccttcttttttgcagTCGGAGCCGGAGTTCCGGCCGCCGATGTCCGAAGTCGTGCAGCAGCTGGTGCGCCTGATGCAGCGGGCGAGCATCGTGAGGCGACAATCGGACGACCAGC

Basic information

species Zea mays
transcript GRMZM2G071573_T02
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G071573_T01 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os06g42800.1 (Oryza sativa), 3'ss of exon 15
gtactgttggtgctgcatatgcagcataaactcctccgaactctcttcttttttgcaaagagcc-ttgttctttcagaggtggactaagatggccttc-ttttttgcagTCGGAGCCGGAGTTCCGGCCGCCGATGTCCGAAGTCGTGCAGCAGCTGGTGCGCCTGATGCAGCGGGCGAGCATCGTGAGGCGACAATCGGACGACCAGC
      |||||  || |||  ||  || ||||       |||||          || |||| |  |  |  |||      || || |  |||   |   |  |||| || | || ||||||||||| || ||||||||||| || || ||||| |||||||||||| ||||| |||| ||||| |||||||| ||||| |  ||  |  
------ttggttttggata-aca-tatgaactagaa-atactcttcagaagcacgctaagatcgatcatcattttcagtttgtaccataatgctgtcaatgctttgtagCCCGAACCGGAGTTCCGTCCACCGATGTCCGAGGTTGTCCAGCAACTGGTGCGCCTGGTGCAGAGGGCAAGCATGGTGAGGCGTCAATCAGGAGAGGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcaaagagccttgttctttcagaggtggactaagatggccttcttttttgcagTCGGAGCCGGAGTTCCGGCCGCCGATGTCCGAAGTCGTGCAGCAGCTGGTGCGCCTGATGCAGCGGGCGAGCATCGTGAGGCGACAATCGGACGACCAGC
                                        ccttcttttttgc  CT-rich tract
                                          ttctttttt  TA-rich tract