1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...cttttaaaatttgttgcgtgctatttttcatggtttcttcgaatgctaggactgcatcttcttttgcaaatatgggacttaagtttcttctttccctcagGTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATTGGTAGTAAAGTTTTGACTGATTTGGTTGAGGGCCTTGAGGAAGCTGATG
species | Zea mays |
transcript | GRMZM2G069676_T03 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATGGAGCGCTGAAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATG GTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATTEST: gi|78112841|gb|DV531235.1|DV531235
genomic: ATGGAGCGCTGAAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATGgtaaggacta ... tttccctcagGTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATT
EST: ATGGAGCGCTGAAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATG GTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATTEST: gi|60341753|gb|DN208726.1|DN208726
genomic: ATGGAGCGCTGAAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATGgtaaggacta ... tttccctcagGTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATT
EST: ATGGAGCGCTGAAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATG GTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATTEST: gi|20512826|gb|BQ280024.1|BQ280024
genomic: ATGGAGCGCTGAAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATGgtaaggacta ... tttccctcagGTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATT
EST: ATGGAGCGCTGAAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATG GTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATTEST: gi|32928442|gb|CF033254.1|CF033254
genomic: ATGGAGCGCTGAAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATGgtaaggacta ... tttccctcagGTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATT
EST: ATGGAGCGCTGGAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATG GTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATTEST: gi|32928208|gb|CF033020.1|CF033020
genomic: ATGGAGCGCTGAAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATGgtaaggacta ... tttccctcagGTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATT
EST: ATGGAGCGCTGGAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATG GTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATTEST: gi|32929540|gb|CF034352.1|CF034352
genomic: ATGGAGCGCTGAAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATGgtaaggacta ... tttccctcagGTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATT
EST: ATGGAGCGCTGGAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATG GTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATT
genomic: ATGGAGCGCTGAAAGAGAACCACTGGCTTGATGATGGAGCATACCTTATGgtaaggacta ... tttccctcagGTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATT
ctaggactgcatcttcttttgcaaatatgggacttaagtttcttctttccctcagGTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATTGGTAGTAAAGTTTTGACTGATTTGGTTGAGGGCCTTGAGGAAGCTGATG
cttaagtttcttcttt CT-rich tract
ttaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttaaaatttgttgcgtgctatttttcatggtttcttcgaatgctaggactgcatcttcttttgcaaatatgggacttaagtttcttctttccctcagGTCAAACTTTTGAATAAACTTGCTGCTGCTAGAACACTGGGTTCAAGTATTGGTAGTAAAGTTTTGACTGATTTGGTTGAGGGCCTTGAGGAAGCTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - tgcgtgc
- - - - - - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - - - - - gaatgct