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gtagattggttggtctgttctcgtcatgtgtaaacacatgaataaattttcatcatttacaaggaaatgttagttctactggtaatcataatcttttgtcagGTTGCGTGAGTATGAGCTCAATCTTCCAAGTTCAAACAAGGGACTTGATGTTGGAAGGGTGTATTTTGTGATCCTCGAGATGTCCC
species | Zea mays |
transcript | GRMZM2G068212_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CGAATTGATGCACCGATCTACTTTGCCAACATTAGCTACATCAAAGACAG GTTGCGTGAGTATGAGCTCAATCTTCCAAGTTCAAACAAGGGACTTGATGTEST: gi|32834247|gb|CD973925.1|CD973925
genomic: CGAATTGATGCACCGATCTACTTTGCCAACATTAGCTACATCAAAGACAGgtagattggt ... cttttgtcagGTTGCGTGAGTATGAGCTCAATCTTCCAAGTTCAAACAAGGGACTTGATGT
EST: CGAATTGATGCACCGATCTACTTTGCCAACATTAGCTACATCAAAGACAG GTTGCGTGAGTATGAGCTCAATCTTCCAAGTTCAAACAAGGGACTTGATGTEST: gi|32825639|gb|CD965359.1|CD965359
genomic: CGAATTGATGCACCGATCTACTTTGCCAACATTAGCTACATCAAAGACAGgtagattggt ... cttttgtcagGTTGCGTGAGTATGAGCTCAATCTTCCAAGTTCAAACAAGGGACTTGATGT
EST: GATCTACTTTGCCAACATTAGCTACATCAAAGACAG GTTGCGTGAGTATGAGCTCAATCTTCCAAGTTCAAACAAGGGACTTGATGTEST: gi|32832081|gb|CD971759.1|CD971759
genomic: GATCTACTTTGCCAACATTAGCTACATCAAAGACAGgtagattggt ... cttttgtcagGTTGCGTGAGTATGAGCTCAATCTTCCAAGTTCAAACAAGGGACTTGATGT
EST: CGAATTGATGCACCGATCTACTTTGCCAACATTAGCTACATCAAAGACAG GTTGCGTGAGTATGAGCTCAATCTTCCAAGTTCAAACAAGGGACTTGATGT
genomic: CGAATTGATGCACCGATCTACTTTGCCAACATTAGCTACATCAAAGACAGgtagattggt ... cttttgtcagGTTGCGTGAGTATGAGCTCAATCTTCCAAGTTCAAACAAGGGACTTGATGT
tttcatcatttacaaggaaatgttagttctactggtaatcataatcttttgtcagGTTGCGTGAGTATGAGCTCAATCTTCCAAGTTCAAACAAGGGACTTGATGTTGGAAGGGTGTATTTTGTGATCCTCGAGATGTCCC
tcttttgtc CT-rich tract
taatcataatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagattggttggtctgttctcgtcatgtgtaaacacatgaataaattttcatcatttacaaggaaatgttagttctactggtaatcataatcttttgtcagGTTGCGTGAGTATGAGCTCAATCTTCCAAGTTCAAACAAGGGACTTGATGTTGGAAGGGTGTATTTTGTGATCCTCGAGATGTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG