1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtgagaagacatcgctcgccatataactagttcgccattttgatcttgcaccggttctaacttgcaagcacctgcacctggggggcgccagATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATAATCAGCCATCTGAAGAAAGAGATGCCTGCACTGATGGGCAAGGCCAAGG
species | Zea mays |
transcript | GRMZM2G065012_T03 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGG ATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATAEST: gi|149102174|gb|EE287594.2|EE287594
genomic: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGGgtgagaagac ... ggggcgccagATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATA
EST: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGG ATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATAEST: gi|71333236|gb|DR803672.1|DR803672
genomic: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGGgtgagaagac ... ggggcgccagATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATA
EST: GAACGACATCCCCAAGAAGGCCTGCGACCGTCGG ATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATAEST: gi|22545340|gb|BU097699.1|BU097699
genomic: GAACGACATCCCCAAGAAGGCCTGCGACCGTCGGgtgagaagac ... ggggcgccagATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATA
EST: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGG ATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATAEST: gi|89106667|gb|DY576884.1|DY576884
genomic: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGGgtgagaagac ... ggggcgccagATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATA
EST: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGG ATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATAEST: gi|21390315|gb|BQ528364.1|BQ528364
genomic: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGGgtgagaagac ... ggggcgccagATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATA
EST: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGG ATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATAEST: gi|211180217|gb|FK950408.1|FK950408
genomic: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGGgtgagaagac ... ggggcgccagATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATA
EST: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGG ATCAATGAGTTCGTGAAGCGGGGCGAGGGCGGCCAAGGTCCACGCGCACAT
genomic: ACTTGCTCTCGGACCTGAACGACATCCCCAAGAAGGCCTGCGACCGTCGGgtgagaagac ... ggggcgccagATCAACGAGTTCGTGAAGCGGG-CAAGGGCGGCTAAAGTCCACGCGCACAT
attttgatcttgcaccggttctaacttgcaagcacctgcacctggggggcgccagATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATAATCAGCCATCTGAAGAAAGAGATGCCTGCACTGATGGGCAAGGCCAAGG
ttctaac putative branch site (score: 1)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaagacatcgctcgccatataactagttcgccattttgatcttgcaccggttctaacttgcaagcacctgcacctggggggcgccagATCAACGAGTTCGTGAAGCGGGCAAGGGCGGCTAAAGTCCACGCGCACATAATCAGCCATCTGAAGAAAGAGATGCCTGCACTGATGGGCAAGGCCAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG