1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaggcatattttttttgtcattagctttggtgtggtcacattgttcttcaagcagatggttccccttggggcatcaatcttgaattcttgatcgaaatatttggtttctttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAGCGGGACGAACCATGTCCTTCCGACCTATGGTTACGCAAGGATGTACAG
species | Zea mays |
transcript | GRMZM2G058584_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|22521319|gb|BU080130.1|BU080130
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: TGGGAAGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|22521320|gb|BU080131.1|BU080131
genomic: TGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: TCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|101389917|gb|EB816889.1|EB816889
genomic: TCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|78025141|gb|DV493528.1|DV493528
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAAGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|71432207|gb|DR813257.1|DR813257
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|76283948|gb|DV023516.1|DV023516
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|5081158|gb|AI738204.1|AI738204
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAAGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|76012898|gb|DT940068.1|DT940068
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|50325709|gb|CO520835.1|CO520835
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|211059003|gb|FL461767.1|FL461767
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|101394855|gb|EB819362.1|EB819362
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|71313988|gb|DR793606.1|DR793606
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|148957295|gb|EC903330.2|EC903330
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|78179432|gb|DV549805.1|DV549805
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAAGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|93017017|gb|EB642537.1|EB642537
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|86471200|gb|DY237570.1|DY237570
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|71432206|gb|DR813256.1|DR813256
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|71774595|gb|DR972473.1|DR972473
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|50331813|gb|CO526939.1|CO526939
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGGGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|14244763|gb|BG842701.2|BG842701
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|32840983|gb|CD980664.1|CD980664
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|101394357|gb|EB819113.1|EB819113
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAEST: gi|71769688|gb|DR967625.1|DR967625
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
EST: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAG GGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
genomic: CATCAACGTAAAGGATGCTGAGCAGTGGGAGGAGTTCATCGAAAACGCAGgtaggcatat ... tttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGA
ccttggggcatcaatcttgaattcttgatcgaaatatttggtttctttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAGCGGGACGAACCATGTCCTTCCGACCTATGGTTACGCAAGGATGTACAG
tcttgat putative branch site (score: 33)
tttctttacctc putative PPT
aaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcatattttttttgtcattagctttggtgtggtcacattgttcttcaagcagatggttccccttggggcatcaatcttgaattcttgatcgaaatatttggtttctttacctcagGGTCAGTTTTCTTGGGCCAATGGACCCCAGAGAGCGTGGGCGATTATGCGAGCGGGACGAACCATGTCCTTCCGACCTATGGTTACGCAAGGATGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG