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...agagggcaagtggtattattttatccaagtaaatatgttgcattttttcagtttatttggtattgttatgactcatgtggaattaacaaacaatatgcagGTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAACATGATTATTGGACAAGCAATTCCTTCAAACTTTATACCAGCAATAGAG
species | Zea mays |
transcript | GRMZM2G056393_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACGAGTTTGTGG GTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAAEST: gi|211184463|gb|FL030548.1|FL030548
genomic: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACGAGTTTGTGGgtgagttcat ... caatatgcagGTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAA
EST: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACGAGTTTGTGG GTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAAEST: gi|6194594|gb|AW146698.1|AW146698
genomic: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACGAGTTTGTGGgtgagttcat ... caatatgcagGTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAA
EST: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACGAGTTTGTGG GTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAAEST: gi|6020648|gb|AW065681.1|AW065681
genomic: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACGAGTTTGTGGgtgagttcat ... caatatgcagGTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAA
EST: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACGAGTTTGTGG GTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAAEST: gi|69351603|gb|DR452190.1|DR452190
genomic: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACGAGTTTGTGGgtgagttcat ... caatatgcagGTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAA
EST: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACAAGTTTGTGG GTACATTGAGCCTCTTCCTTCAGGTTCTGATGGTAAATTCGAATTTGATAAEST: gi|67017174|gb|CO445923.1|CO445923
genomic: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACGAGTTTGTGGgtgagttcat ... caatatgcagGTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAA
EST: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACGAGTTTGTGG GTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAA
genomic: TTGCACAAAAAGCAATCTGGCGGTCAAGGTCAGTATGGACGAGTTTGTGGgtgagttcat ... caatatgcagGTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAA
tttcagtttatttggtattgttatgactcatgtggaattaacaaacaatatgcagGTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAACATGATTATTGGACAAGCAATTCCTTCAAACTTTATACCAGCAATAGAG
aattaac putative branch site (score: 2)
aattaacaaacaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagggcaagtggtattattttatccaagtaaatatgttgcattttttcagtttatttggtattgttatgactcatgtggaattaacaaacaatatgcagGTACATTGAGCCTCTACCTTCAGGTTCTGATGGTAAATTCGAATTTGATAACATGATTATTGGACAAGCAATTCCTTCAAACTTTATACCAGCAATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA