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...tttaaatgatgttatggcgcaggtttcactagatgcttgtggctaatttatagtgaagctatgagaagttgcccctttgacattttcttattttgtacagGACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCATTCCACAGTGCACGACGGATGGTCTATGTTAATCCTGCAACTGGTCAAA
species | Zea mays |
transcript | GRMZM2G053047_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGTCTCCACAAG GACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCAEST: gi|20337002|gb|BQ172632.1|BQ172632
genomic: AGTCTCCACAAGgtgaaccctt ... ttttgtacagGACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCA
EST: TGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAG GACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCAEST: gi|60342418|gb|DN209391.1|DN209391
genomic: TGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAGgtgaaccctt ... ttttgtacagGACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCA
EST: TGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAG GACCAGCACTGCTACTCTCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCAEST: gi|60352494|gb|DN219467.1|DN219467
genomic: TGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAGgtgaaccctt ... ttttgtacagGACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCA
EST: TGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAG GACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCA
genomic: TGTATGACAAGCACCATCAAACTGGGCATTGCATCTTGAGTCTCCACAAGgtgaaccctt ... ttttgtacagGACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCA
atttatagtgaagctatgagaagttgcccctttgacattttcttattttgtacagGACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCATTCCACAGTGCACGACGGATGGTCTATGTTAATCCTGCAACTGGTCAAA
cattttcttatttt CT-rich tract
attttcttattttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaaatgatgttatggcgcaggtttcactagatgcttgtggctaatttatagtgaagctatgagaagttgcccctttgacattttcttattttgtacagGACCAGCACTGCTACTCCCGTCTTCTGGAGTTGATTGTGAATGTTTGGGCATTCCACAGTGCACGACGGATGGTCTATGTTAATCCTGCAACTGGTCAAA
- - - tgatgtt
- - - - - - - - - - - - - - - - -tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagct