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gttgagaacaactaaccctattcctatgtgctggtgtataaacaaacaagctcattgggatgatcactcaggtggtactgggtactaacaagtatatgcgtatgacatgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACCGAAGCCGACCTGACCGCACCTTCCTTTACGGAGAGGTCGGGCTTCCCC
species | Zea mays |
transcript | GRMZM2G052546_T07 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG----A A-GAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACEST: gi|5650248|gb|AI920608.1|AI920608
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCA AAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACEST: gi|76914763|gb|DV165676.1|DV165676
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCA AAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACEST: gi|78021110|gb|DV489497.1|DV489497
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCA AAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACEST: gi|211335099|gb|FK972896.1|FK972896
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG----A A-GAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACEST: gi|211409237|gb|FL441028.1|FL441028
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGA-G---- AAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACEST: gi|33091895|gb|CF051889.1|CF051889
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGAC
EST: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAG----A A-GAATGATGATGACTGA
genomic: AGAGAGTACTTGGAACAGTACGCGGATGCCGCCGAGCGCTAGGAGGTCCAgttgagaaca ... tgaactgcagAAGAATGATGATGACTGA
atcactcaggtggtactgggtactaacaagtatatgcgtatgacatgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACCGAAGCCGACCTGACCGCACCTTCCTTTACGGAGAGGTCGGGCTTCCCC
tactaac putative branch site (score: 0)
aagtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgagaacaactaaccctattcctatgtgctggtgtataaacaaacaagctcattgggatgatcactcaggtggtactgggtactaacaagtatatgcgtatgacatgaactgcagAAGAATGATGATGACTGAGGAAGAGAAGAGACACACCATGAGACGACGGACCGAAGCCGACCTGACCGCACCTTCCTTTACGGAGAGGTCGGGCTTCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG