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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caggaccgtggaactaaaactgttttttaaacgtattaatgaactatggtttttatcatttcattaactcctttggtacatcctttctcctccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCATTATTGTCATCTGAAAGCATTTCTCTCTCTGATAACATTCATGATACAT

Basic information

species Zea mays
transcript GRMZM2G047894_T01
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31348859|gb|CD433216.1|CD433216
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|32934739|gb|CF039551.1|CF039551
EST:     GTACAAATGTGACACAG                         AGTTTCTTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: GTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|40335862|gb|CK369932.1|CK369932
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|71325384|gb|DR799369.1|DR799369
EST:     AGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATAGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: AGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|71311517|gb|DR792122.1|DR792122
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|5296286|gb|AI783056.1|AI783056
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|5846902|gb|AI999985.1|AI999985
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|32850672|gb|CD990353.1|CD990353
EST:     ACAAATGTGACACAG                         AGTTTCTTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: ACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
EST: gi|60343346|gb|DN210319.1|DN210319
EST:     TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAG                         AGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA
genomic: TAGTTAGGTCCAATTGCATTGATTGCCTGGACCGTACAAATGTGACACAGgtttgtacgt ... tccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtttttatcatttcattaactcctttggtacatcctttctcctccttaacagAGTTTCCTTGCAAGAAAATCATTGGATTCTCAATTGCAGCTGATGGGAGCATTATTGTCATCTGAAAGCATTTCTCTCTCTGATAACATTCATGATACAT
                cattaac  putative branch site (score: 2)
                      ctcctttggtacatcc  CT-rich tract
     ttttatcatttcatta  TA-rich tract