Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacctatctctttctactagatgctgatgattttttttttctattgaaggctctttgatttacaaatataatgtgctagtgtggtgtggtattttaggatagattggttcaacatttactacctttgaaattcagttgcttatcctttgagctgatcggttattgatttatagGTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAATGCTATGTTTACATGGTTTGGCAATTCTAGCACATATGAGCAACAGCAGT

Basic information

species Zea mays
transcript GRMZM2G047310_T02
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211106295|gb|FL022813.1|FL022813
EST:     AGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCG                         GTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
genomic: AGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCGgtactaccta ... tgatttatagGTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
EST: gi|211541601|gb|FL022804.1|FL022804
EST:     GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCG                         GTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
genomic: GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCGgtactaccta ... tgatttatagGTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
EST: gi|211106291|gb|FL022809.1|FL022809
EST:     GAGTATCTGAGACATCTATCTACAACAACAAAACTCTTCAAGTAAATGCG                         GTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
genomic: GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCGgtactaccta ... tgatttatagGTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
EST: gi|211106290|gb|FL022808.1|FL022808
EST:     GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCG                         GTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
genomic: GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCGgtactaccta ... tgatttatagGTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
EST: gi|211106299|gb|FL022817.1|FL022817
EST:     GAGTATCTGAGACATCTATCTACAACAACAAAACTCTTCAAGTAAATGCG                         GTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
genomic: GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCGgtactaccta ... tgatttatagGTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
EST: gi|211106292|gb|FL022810.1|FL022810
EST:     GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCG                         GTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
genomic: GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCGgtactaccta ... tgatttatagGTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
EST: gi|211541598|gb|FL022801.1|FL022801
EST:     GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCG                         GTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
genomic: GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCGgtactaccta ... tgatttatagGTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
EST: gi|211106296|gb|FL022814.1|FL022814
EST:     GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCG                         GTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT
genomic: GAGTATCTGAGACATCTATCTACAACAACAAGACTCTTCAAGTAGATGCGgtactaccta ... tgatttatagGTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacctttgaaattcagttgcttatcctttgagctgatcggttattgatttatagGTAGCAACGTCTTTAAGCTCAACGGAGTCTTTCGTACTGCAATCTGGAAATGCTATGTTTACATGGTTTGGCAATTCTAGCACATATGAGCAACAGCAGT
                                          tattgat  putative branch site (score: 3)
                                         ttattgatttata  TA-rich tract