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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtgttactgtgcccttggtcttaagtgtccacaaccttacagtggaatgaaatagatcggtagatctgctgaaattaatctgaaagaatttaagatcgtatggatatgcgaattgagaatcacaaaagttccattactgaaacactataccgaacgcaccaatttattttgtagGTAGTGGAGCTTGATTTCTTATATCCAAGTGAGGGCATCCACATGCGTTGGGACAATGGCTATCGCATTACGGCAACGGCTGCCACATGGGACCAGGCGG

Basic information

species Zea mays
transcript GRMZM2G045259_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G045259_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os01g10150.1 (Oryza sativa), 3'ss of exon 14
gtatatgtgttactgtgcccttggtcttaagtgtccacaaccttacagtggaatgaaatagatcggtagatctgctgaaattaatctgaaagaatttaagatcgtatggatatgcgaattgagaatcacaaaagttccattactgaaacactataccgaacgcaccaatttattttgtagGTAGTGGAGCTTGATTTCTTATATCCAAGTGAGGGCATCCACATGCGTTGGGACAATGGCTATCGCATTACGGCAACGGCTGCCACATGGGACCAGGCGG
                                               ||    |   |  |  |   ||   ||   || | |||       | ||||  | |     | ||  |  | |   |||   | | ||   | |  ||| |   |||    | | | |  || | ||||||||||||| || ||||||||||||||||| ||||| || |||||    || ||||| | ||| |||||||| || ||||| || |||||||| ||||||| ||
-----------------------------------------------gtacgtttggagtgtccaagagccttgtaaaattgaattc-----attttagcagca---agctacactgactatcaattgaatatgtaaaagtcttgagattttatt---atctcgcatatctcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGGGATAGTGGTTATCGCATAACTGCAACAGCAGCCACATGTGACCAGGTGG

upper sequence: GRMZM2G045259_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os01g10150.2 (Oryza sativa), 3'ss of exon 14
gtatatgtgttactgtgcccttggtcttaagtgtccacaaccttacagtggaatgaaatagatcggtagatctgctgaaattaatctgaaagaatttaagatcgtatggatatgcgaattgagaatcacaaaagttccattactgaaacactataccgaacgcaccaatttattttgtagGTAGTGGAGCTTGATTTCTTATATCCAAGTGAGGGCATCCACATGCGTTGGGACAATGGCTATCGCATTACGGCAACGGCTGCCACATGGGACCAGGCGG----
                                               ||    |   |  |  |   ||   ||   || | |||       | ||||  | |     | ||  |  | |   |||   | | ||   | |  ||| |   |||    | | | |  || | ||||||||||||| || ||||||||||||||||| ||||| || |||||    || ||||| | ||| |||||||| || ||||| || |||||||| ||||||| ||    
-----------------------------------------------gtacgtttggagtgtccaagagccttgtaaaattgaattc-----attttagcagca---agctacactgactatcaattgaatatgtaaaagtcttgagattttatt---atctcgcatatctcttttgtaggtagTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGGGATAGTGGTTATCGCATAACTGCAACAGCAGCCACATGTGACCAGGTGGCTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8516441|gb|BE123167.1|BE123167
EST:     GAAGCCGATGGGCAGTTGTCATGTCCCGCAATGCTGGTTTCACTTCTCAG                         GTAGTGGAGCTTGATTTCTTATATCCAAGTGAGGGCATCCACATGCGTTGG
genomic: GAAGCCGATGGGCAGTTGTCATGTCCCGCAATGCTGGTTTCACTTCTCAGgtatatgtgt ... tattttgtagGTAGTGGAGCTTGATTTCTTATATCCAAGTGAGGGCATCCACATGCGTTGG
EST: gi|67025278|gb|CO454027.1|CO454027
EST:     GAAGCCGATGGGCAGTTGTCATGTCCCGCAATGCTGGTTTCACTTCTCAG                         GTAGTGGAGCTTGATTTCTTATATCCAAGTGAGGGCATCCACATGCGTTGG
genomic: GAAGCCGATGGGCAGTTGTCATGTCCCGCAATGCTGGTTTCACTTCTCAGgtatatgtgt ... tattttgtagGTAGTGGAGCTTGATTTCTTATATCCAAGTGAGGGCATCCACATGCGTTGG
EST: gi|9956162|gb|BE643596.1|BE643596
EST:     GAAGCCGATGGGCAGTTGTCATGTCCCGCAATGCTGGCTTCACTTCTCAG                         GTAGTGGAGCTTGATTTCTTATATCCAAGTGAGGGCATCCACATGCGTTGG
genomic: GAAGCCGATGGGCAGTTGTCATGTCCCGCAATGCTGGTTTCACTTCTCAGgtatatgtgt ... tattttgtagGTAGTGGAGCTTGATTTCTTATATCCAAGTGAGGGCATCCACATGCGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacaaaagttccattactgaaacactataccgaacgcaccaatttattttgtagGTAGTGGAGCTTGATTTCTTATATCCAAGTGAGGGCATCCACATGCGTTGGGACAATGGCTATCGCATTACGGCAACGGCTGCCACATGGGACCAGGCGG
                                           tttatttt  CT-rich tract
                                         aatttattttgta  TA-rich tract