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gtgagtcactttttttttatcaaagctatggtcatgacatatcttaactttaagacaataataatttaactgaatccttttgtatgactttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGATGATTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGG
species | Zea mays |
transcript | GRMZM2G045241_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTA AAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGEST: gi|32797227|gb|CD949463.1|CD949463
genomic: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTAgtgagtcact ... actttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTG
EST: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTA AAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGEST: gi|78081455|gb|DV509867.1|DV509867
genomic: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTAgtgagtcact ... actttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTG
EST: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTA AAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGEST: gi|32799719|gb|CD951955.1|CD951955
genomic: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTAgtgagtcact ... actttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTG
EST: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTA AAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGEST: gi|211252583|gb|FL430692.1|FL430692
genomic: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTAgtgagtcact ... actttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTG
EST: CTGTACATGATGCTTACCATACAAAAACAAACGGACCTA AAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGEST: gi|76908596|gb|DV163020.1|DV163020
genomic: CTGTACATGATGCTTACCATACAAAAACAAACGGACCTAgtgagtcact ... actttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTG
EST: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTA AAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGEST: gi|78117446|gb|DV535833.1|DV535833
genomic: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTAgtgagtcact ... actttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTG
EST: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTA AAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGEST: gi|32800743|gb|CD952979.1|CD952979
genomic: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTAgtgagtcact ... actttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTG
EST: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTA AAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGEST: gi|211489897|gb|FL473955.1|FL473955
genomic: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTAgtgagtcact ... actttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTG
EST: CCATACAAAAACAAACGGACCAA AAGCTGAACCAAGATTGGAACTGAACCGGTGGGATTTCAGCACAGAACCTGEST: gi|32800292|gb|CD952528.1|CD952528
genomic: CCATACAAAAACAAACGGACCTAgtgagtcact ... actttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTG
EST: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTA AAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTG
genomic: GGTACCAAGACCTGTACATGATGCTTACCATACAAAAACAAACGGACCTAgtgagtcact ... actttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTG
tcttaactttaagacaataataatttaactgaatccttttgtatgactttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGATGATTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGG
tttaagacaataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcactttttttttatcaaagctatggtcatgacatatcttaactttaagacaataataatttaactgaatccttttgtatgactttaacagAAGCTGAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGATGATTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC