1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttagacaaagttatattgcatagtcaatccatgttttgtcgtcttggtcaccgtaaatagactagggtttctttagttctattaggatctaagtgcttattctctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGTAAACATTGATATATCAGTTGGTAAGCATTCAGCTTCTTTATTGCAAATT
species | Zea mays |
transcript | GRMZM2G044237_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG ATTGGCCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTEST: gi|22552553|gb|BU102392.1|BU102392
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGT
EST: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG ATTGGCCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGTEST: gi|32835096|gb|CD974774.1|CD974774
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
EST: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG ATTGGCCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTAEST: gi|20802518|gb|BQ293568.1|BQ293568
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTA
EST: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG ATTGGCCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGTEST: gi|32928445|gb|CF033257.1|CF033257
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
EST: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG ATTGGCCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTEST: gi|78543892|gb|DV621390.1|DV621390
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGT
EST: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG ATTGGCCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGTEST: gi|76917242|gb|DV166726.1|DV166726
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
EST: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAG ATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
genomic: CTGGGAGTTATTCCACTAATGAAAAATGGGCAACCACTCCCCTTTGACAGgttagacaaa ... ctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGT
agactagggtttctttagttctattaggatctaagtgcttattctctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGTAAACATTGATATATCAGTTGGTAAGCATTCAGCTTCTTTATTGCAAATT
tgcttattctctttct CT-rich tract
tttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagacaaagttatattgcatagtcaatccatgttttgtcgtcttggtcaccgtaaatagactagggtttctttagttctattaggatctaagtgcttattctctttctttagATTGACCGCTAGCAAGTATCTCAAAGATGCTGGAGATGCCCATGGTACAGTAAACATTGATATATCAGTTGGTAAGCATTCAGCTTCTTTATTGCAAATT
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