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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttgaataaagaaatagatcaaggttctaaaagagattatcttgagcaatttgtattaagaccgtgatttgctaaccagtcacttgttttaattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTGTTTGCACCAATTGATGAGCATTTTCCGGATGATGCTCCATTGATTTCCT

Basic information

species Zea mays
transcript GRMZM2G042250_T03
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G042250_T03 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os03g01890.1 (Oryza sativa), 3'ss of exon 14
------------tcttgaataaagaaatagatcaaggttctaaaagagattatcttgagcaatttgtattaagaccgtgatttgctaaccagtcacttgttttaattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTGTTTGCACCAATTGATGAGCATTTTCCGGATGATGCTCCATTGATTTCCT---
            ||     |  |   | ||   ||| | |    | || || |  ||||    |||||  || |      ||||||||     | ||| | ||   || ||||| |||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| ||||||||   ||| || |||||  ||||||||||||| |   
tacacccttttttcccccttcgaagtacagtcaaagatgc----aaagctttttatgag--gcttgta--aatattccagtttgctaatatacc-cttatctt---ttgcagCTCTGCACTGGAATAGACGAGAAGTCTGTGGGATCCTCCTTTCAGCTTGTGTTTGCACCGATTGATGA---TTTCCCAGATGAAACTCCATTGATTTCTTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20300774|gb|BQ163717.1|BQ163717
EST:     CTCTTACTCATGATGAAGCCCTTCTTTCAAGGGACATCCACCTTCTCCAG                         CTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG
genomic: CTCTTACTCATGATGAAGCCCTTCTTTCAAGGGACATCCACCTTCTCCAGgtaaatattt ... taattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG
EST: gi|18964325|gb|BM660940.1|BM660940
EST:     CTCTTACTCATGATGAAGCCCTTCTTTCAAGGGACATCCACCTTCTCCAG                         CTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG
genomic: CTCTTACTCATGATGAAGCCCTTCTTTCAAGGGACATCCACCTTCTCCAGgtaaatattt ... taattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG
EST: gi|19057945|gb|BM736612.1|BM736612
EST:     CTCTTACTCATGATGAAGCCCTTCTTTCAAGGGACATCCACCTTCTCCAG                         CTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGGG
genomic: CTCTTACTCATGATGAAGCCCTTCTTTCAAGGGACATCCACCTTCTCCAGgtaaatattt ... taattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG
EST: gi|87152024|gb|DY396813.1|DY396813
EST:     CTCTTACTCATGATGAAGCCCTTCTTTCAAGGGACATCCACCTTCTCCAG                         CTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAACTTGTG
genomic: CTCTTACTCATGATGAAGCCCTTCTTTCAAGGGACATCCACCTTCTCCAGgtaaatattt ... taattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaatttgtattaagaccgtgatttgctaaccagtcacttgttttaattttcagCTTTGCACTGGAATAGATGAGAAATCTGTGGGTTCCTCCTTCCAGCTTGTGTTTGCACCAATTGATGAGCATTTTCCGGATGATGCTCCATTGATTTCCT
                                      cttgtttt  CT-rich tract
                                     acttgttttaatttt  TA-rich tract