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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggcctcttgtttctttctcgtcatggtatttgtgatgtctgagttttatcccaattccgatcatctatcctgttcctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAGCTTACCAAGGAAGAAGAGGGTAACGAAGAGTAAGCAGCCCACCAGTAGT

Basic information

species Zea mays
transcript GRMZM2G039263_T02
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039263_T01 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os04g46620.1 (Oryza sativa), 3'ss of exon 16
gttaggcctctt-gtttctttctcgtcatggtatttg--tgatgtctgagttttatcccaattccgatcatctatcctgttcctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAGCTTACCAAGGAAGAAGAGGGTAACGAAGAGTAAGCAGCCCACCAGTAGT--
||| |    ||| |  |   |||  ||||| | ||||  |||  ||||||      ||  |  ||  |  ||  |  | || |  |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||    || ||||||||||||  |||  |     | |  
gttggtatacttagcataggtcttatcatgatgtttgactgaaatctgag----gcccttacgccatt--tcctttttttttcccttgcagTTTGCCACTGAGGCGGCCATTACTATCCTGAGGATTGATGACATGATCAAACTTACGAAGGAAGAGAGCGGGAACGAAGAGTAACAAGC--ATTGACACTCA

upper sequence: GRMZM2G039263_T01 (Zea mays), 3'ss of exon 16
lower sequence: GLYMA08G12970.1 (Glycine max), 3'ss of exon 16
gttaggcctcttgtttctttctcgtcatggtatttgtgatgtctgagttttatcccaattccgatcatcta----tcctgttcctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAGCTTACCAAGGAAGAAGAGGGTAACGAAGAGTAAGCAGCCCACCAGTAGT--
  || |  | | |||   |        || |   |   || |     ||   | |  |      | | |||    |  | || ||    |||||||| || || |||||||||||||||||  | ||||| |||||||||||||||| |||||| |||      || || || |||  ||   | | | |    
-gtatgtatttagttaaatatcacagttgttgacttcaatatacagcttccttacacagctgcgtgagctagaagtttttttacttccccagTTTGCAACTGAAGCTGCCATTACTATCCTTCGAATTGATGACATGATCAAGCTTATCAAGGATGAAAGTCAAAATGAGGATTAA--AGTATAACTGAATCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32936675|gb|CF041494.1|CF041494
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|116828177|gb|EC872143.1|EC872143
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|33094791|gb|CF054785.1|CF054785
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|116828036|gb|EC871989.1|EC871989
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|101400344|gb|EB821995.1|EB821995
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|60337165|gb|DN204138.1|DN204138
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|149074900|gb|EE163348.2|EE163348
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|211524478|gb|FK952706.1|FK952706
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTA-YCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|22521580|gb|BU080391.1|BU080391
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|67015007|gb|CO443756.1|CO443756
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|32930050|gb|CF034862.1|CF034862
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|101400342|gb|EB821994.1|EB821994
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|37400207|gb|CF637451.1|CF637451
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|32937857|gb|CF042676.1|CF042676
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|32930322|gb|CF035134.1|CF035134
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|211524477|gb|FK952705.1|FK952705
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGTCATTACTACTNCTGAGGATTGACGACATGATCAA
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTA-TCCTGAGGATTGACGACATGATCAA
EST: gi|4624412|gb|AI615245.1|AI615245
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGGCGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|32935052|gb|CF039864.1|CF039864
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|211088488|gb|FL432079.1|FL432079
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|7136143|gb|AW498446.1|AW498446
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|60350871|gb|DN217844.1|DN217844
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|44901279|gb|CK827824.1|CK827824
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|33097959|gb|CF057919.1|CF057919
EST:     TTGAGTATGGCGTGATTGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|32937830|gb|CF042649.1|CF042649
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|211524480|gb|FK952708.1|FK952708
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTAYTGCTGAGGATTGACGACATGATCAA
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTA-TCCTGAGGATTGACGACATGATCAA
EST: gi|116820289|gb|EC863500.1|EC863500
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|31405908|gb|CD484640.1|CD484640
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|211524479|gb|FK952707.1|FK952707
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|211524476|gb|FK952704.1|FK952704
EST:     TTGAGTATGGCGTGATAGAGCCWTCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|87152533|gb|DY397322.1|DY397322
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|211163740|gb|FL337965.1|FL337965
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|166538001|gb|EG117567.1|EG117567
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGG
EST: gi|31406183|gb|CD484915.1|CD484915
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|32847396|gb|CD987077.1|CD987077
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|211524475|gb|FK952703.1|FK952703
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|60338102|gb|DN205075.1|DN205075
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|84977527|gb|DW475949.1|DW475949
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|14203032|gb|BG836709.1|BG836709
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|67018449|gb|CO447198.1|CO447198
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGGAG-CTGCCATTACTATCCTNGAG-ATTGACGACATGATCA
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGG-AGGCTGCCATTACTATCCT-GAGGATTGACGACATGATCA
EST: gi|21331561|gb|BQ486942.1|BQ486942
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|87157304|gb|DY402093.1|DY402093
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|211015857|gb|FL458030.1|FL458030
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|60337774|gb|DN204747.1|DN204747
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
EST: gi|211524474|gb|FK952702.1|FK952702
EST:     TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAG                         TTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG
genomic: TTGAGTATGGCGTGATAGAGCCATCGATGAGCAAAGTAAAGATCATTCAGgttaggcctc ... cctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgatgtctgagttttatcccaattccgatcatctatcctgttcctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAGCTTACCAAGGAAGAAGAGGGTAACGAAGAGTAAGCAGCCCACCAGTAGT
                                  tctatcctgttcct  CT-rich tract
            agttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttaggcctcttgtttctttctcgtcatggtatttgtgatgtctgagttttatcccaattccgatcatctatcctgttcctgttgcagTTTGCCACGGAGGCTGCCATTACTATCCTGAGGATTGACGACATGATCAAGCTTACCAAGGAAGAAGAGGGTAACGAAGAGTAAGCAGCCCACCAGTAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA