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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgccattctccaaagcttaacatcatcttgaattgttcttgttatgaggaatgcattaatgccataaacgaattcattcctgaactaattctttttgcagGGACCTTCATTGCCATCGTGTTGGATATGACAACAAAAAATTACCTAAAGCAACCCGTGCTATTAATCGTGCCAATCATATGAACGGTGGCAGTTCCCCA

Basic information

species Zea mays
transcript GRMZM2G030596_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030596_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os01g36840.1 (Oryza sativa), 3'ss of exon 14
--cgccattctccaaagc-ttaacatcatcttgaattgttcttgttatgaggaatgcattaatgccataaacgaattcattcctgaactaattctttttgcagGGACCTTCATTGCCATCGTGTTGGATATGACAACAAAAAATTACCTAAAGCAACCCGTGCTATTAATCGTGCCAATCATATGAACGGTGGCAGTTCCCCA
        | |     || | |   |||| ||| | || | || ||  ||   |||  ||  || |||  |    ||||| |   |||| ||| | |||| |||||||| |||||||||||| |||| |||||||||||||||||||||||| |  |||||||  |||||||||| ||||| ||||| | |||||||||||| 
tctattggtttttgctgcgtcattgtcatgttgtagtgct-ttatttggaatgatgactttgtgtcattcatactttcatgct--aactgattatatttgtagGGACCTGCATTGCCATCGTATTGGTTATGACAACAAAAAATTACCTAAATCTTCCCGTGCACTTAATCGTGCTAATCAGATGAATGCTGGCAGTTCCCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31349834|gb|CD434191.1|CD434191
EST:     CTTTATCAAAGACTTGAGTTCCGCTTGAAAGAAATGACTTACGAATACTG                         GGACCTTCATTGCCATCGTGTTGGATATGACAACAAAAAATTACCTAAAGC
genomic: CTTTATCAAAGACTTGAGTTCCGCTTGAAAGAAATGACTTACGAATACTGgtaaagcttt ... ctttttgcagGGACCTTCATTGCCATCGTGTTGGATATGACAACAAAAAATTACCTAAAGC
EST: gi|211528377|gb|FL093833.1|FL093833
EST:     CTTTATCAAAGACTTGAGTTCCGCTTGAAAGAAATGACTTACGAATACTG                         GGACCTTCATTGCCATCGTGTTGGATATGACAACAAAAAATTACCTAAAGC
genomic: CTTTATCAAAGACTTGAGTTCCGCTTGAAAGAAATGACTTACGAATACTGgtaaagcttt ... ctttttgcagGGACCTTCATTGCCATCGTGTTGGATATGACAACAAAAAATTACCTAAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaggaatgcattaatgccataaacgaattcattcctgaactaattctttttgcagGGACCTTCATTGCCATCGTGTTGGATATGACAACAAAAAATTACCTAAAGCAACCCGTGCTATTAATCGTGCCAATCATATGAACGGTGGCAGTTCCCCA
                                     aactaat  putative branch site (score: 2)
                                           ttctttttgc  CT-rich tract
                                     aactaattcttttt  TA-rich tract