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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcagacggttaacatctgttgattatacatttatgctctggttgtagcgacattgttagttgaaatgttgcttatgagtttggtctggtcttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTGGTTCATCTTCTGTACAAAATGGACCACCAACGGCAAACTTTAGCCTTCC

Basic information

species Zea mays
transcript GRMZM2G030144_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030144_T03 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os06g07090.1 (Oryza sativa), 3'ss of exon 14
tcagacggttaacatctgttgattatacattta-tgctctggttgtagcgacattgttagttg-aaatgttgcttatgagtttggtctggtcttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTGGTTCATCTTCTGTACAAAATGGACCACCAACGG---CAAACTTTAGCCTTCC
      | |     |  | || ||    |  |     |       ||   | |  ||| || |   ||  |||| | |  |||| |   |  || |||  ||| |||||||| ||  ||||||| || |||||||||||||||||||| |||||||| ||| | ||||||||||| |||||||| |   |||||||||||||   
--tattgttctgttttggatggtttaggacatggcattgaatccttaatcatacagtttgtggtgtataatgctcacggttttgtttctggtttatgttaagGTGGAGCTCCATCAGCAAGCACAGATATTCTGATGGATCTTCTATCAATTGGTTCTTCTCCAGTACAAAATGGCCCACCAACAGTATCAAACTTTAGCCT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91876800|gb|EB406757.1|EB406757
EST:     TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAG                         GCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacact ... ttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
EST: gi|71433260|gb|DR814310.1|DR814310
EST:     TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAG                         GCGGAGCTCCGTCTACTAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacact ... ttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
EST: gi|67021834|gb|CO450583.1|CO450583
EST:     TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAG                         GCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacact ... ttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
EST: gi|88751809|gb|DY535950.1|DY535950
EST:     TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAG                         GCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacact ... ttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
EST: gi|67037313|gb|CO464163.1|CO464163
EST:     TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAG                         GCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATTGGCTTGACTGATTCGTCTCCTATAGgtcttacact ... ttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcgacattgttagttgaaatgttgcttatgagtttggtctggtcttgtgtctagGCGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTGGTTCATCTTCTGTACAAAATGGACCACCAACGGCAAACTTTAGCCTTCC
      attgtta  TA-rich tract