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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtgatgtcacttcgcttgcttctcatttttgtcttggagatggtaggagtctttaagcttgaactattttttagGGACTCGCGAGATCAATGCCAACCAGTGGTGCTCTTGATCGTGTTGCCGAGAAATTGAATGTTCCATTCTTTGAG

Basic information

species Zea mays
transcript GRMZM2G025854_T02
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025854_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os10g11140.2 (Oryza sativa), 3'ss of exon 14
gtaatgtgatgtcac---ttcgcttgcttctc--------atttttgtcttggagatggtaggagt----ctttaagcttgaactattttttagGGACTCGCGAGATCAATGCCAACCAGTGGTGCTCTTGATCGTGTTGCCGAGAAATTGAATGTTCCATTCTTTGAG
|||||| ||||| ||   ||    || || ||        || || | ||     | |  | || |      ||| | ||||    || || |||| || || |||||||||||||| |||||||||||||||||||| || || |||||||||||||| |||||||||
gtaatgagatgttacacattataatgtttttctaaataggatattagactcatcaaagacaagaatgatctcttatgtttgatactttcttcagGGTCTTGCTAGATCAATGCCAACGAGTGGTGCTCTTGATCGTGTAGCTGATAAATTGAATGTTCCGTTCTTTGAG

upper sequence: GRMZM2G025854_T02 (Zea mays), 3'ss of exon 14
lower sequence: AT5G51820.1 (Arabidopsis thaliana), 3'ss of exon 14
------gtaatgtg-atgtcacttcgcttgct-tctcatttttgtcttggagatggtaggagtctttaagcttgaactattttttagGGACTCGCGAGATCAATGCCAACCAGTGGTGCTCTTGATCGTGTTGCCGAGAAATTGAATGTTCCATTCTTTGAG
       |  | || ||   |    | |  || | | ||||| |   | | |  | |   | |   |       | ||  || | |||| || ||  | || ||||| || ||||||||||||||||||||||||||||| |||||  |||| ||||| |||
gtgggattgctttggataaaatgaagttcactatttaattttagatatagtgccgtttaaacttactggatgcaatcttgttctcagGGGCTGGCACGTTCTATGCCGACAAGTGGTGCTCTTGATCGTGTTGCCGAGAAGTTGAAGCTTCCTTTCTTCGAG

upper sequence: GRMZM2G025854_T02 (Zea mays), 3'ss of exon 14
lower sequence: Vv16s0022g02320.t01 (Vitis vinifera), 3'ss of exon 14
----------------------------gtaatgtgatgtcacttcgcttgcttctcatttttgtcttggagatggtaggag---------tctttaagc-------ttgaactattttt-tagGGACTCGCGAGATCAATGCCAACCAGTGGTGCTCTTGATCGTGTTGCCGAGAAATTGAATGTTCCATTCTTTGAG
                                | |     ||||  |  ||    | |        |   | ||   |  ||           |||||||       ||   |||||||| |||||  | ||  |||| |||||||| ||||||||||||||||||||||| || ||||||| | ||||||||||||||
gtaggaaagttgtgctgttttttcttggaaggtctccctccactgtgtatgaaattaagaaaaaaatgtaaaattaaaaaagaaacttcctcttttaagcacatttttttttctatttttgtagGGTTTAGCTCGATCTATGCCAACGAGTGGTGCTCTTGATCGTGTTGCTGAAAAATTGACTCTTCCATTCTTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctcatttttgtcttggagatggtaggagtctttaagcttgaactattttttagGGACTCGCGAGATCAATGCCAACCAGTGGTGCTCTTGATCGTGTTGCCGAGAAATTGAATGTTCCATTCTTTGAG
                                            ctatttttt  CT-rich tract
                                       ttgaactatttttta  TA-rich tract