1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagttcgtttccgttggcctgatgtgaacgcagtgggtttttgcagcatttctgactgtttacttctgttctaagTGTTTCGGAGGAATCGCTTCGGAAGCAGATAACTTGTTAGATGAGCTTCAGCGCAGCCTATCGAAACAAGAAGAGAGGCTAGCCCATTTCGCAGTGAAGC
species | Zea mays |
transcript | GRMZM2G024576_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAGATTAAATTCACAGATACAGTCACACACATCAGCCCTTGAGAAC TGTTTCGGAGGAATCGCTTCGGAATCAGATAACTTGTTAGATGAGCTTCAGEST: gi|101391269|gb|EB817569.1|EB817569
genomic: TTGAGAGATTAAATTCACAGATACAGTCACACACATCAGCCCTTGAGAACgtaagttcgt ... ctgttctaagTGTTTCGGAGGAATCGCTTCGGAAGCAGATAACTTGTTAGATGAGCTTCAG
EST: TTGAGAGATTAAATTCACAGATACAGTCACACACATCAGCCCTTGAGAAC TGTTTCGGAGGAATCGCTTCGGAAGCAGATAACTTGTTAGATGAGCTTCAGEST: gi|211222610|gb|FK991618.1|FK991618
genomic: TTGAGAGATTAAATTCACAGATACAGTCACACACATCAGCCCTTGAGAACgtaagttcgt ... ctgttctaagTGTTTCGGAGGAATCGCTTCGGAAGCAGATAACTTGTTAGATGAGCTTCAG
EST: TTGAGAGATTAAATTCACAGATACAGTCACACACATCAGCCCTTGAGAAC TGTTTCGGAGGAATCGCTTCGGAAGCAGATAACTTGTTAGATGAGCTTCAG
genomic: TTGAGAGATTAAATTCACAGATACAGTCACACACATCAGCCCTTGAGAACgtaagttcgt ... ctgttctaagTGTTTCGGAGGAATCGCTTCGGAAGCAGATAACTTGTTAGATGAGCTTCAG
gatgtgaacgcagtgggtttttgcagcatttctgactgtttacttctgttctaagTGTTTCGGAGGAATCGCTTCGGAAGCAGATAACTTGTTAGATGAGCTTCAGCGCAGCCTATCGAAACAAGAAGAGAGGCTAGCCCATTTCGCAGTGAAGC
ttctgac putative branch site (score: 90)
tttacttctgttct putative PPT
tttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcgtttccgttggcctgatgtgaacgcagtgggtttttgcagcatttctgactgtttacttctgttctaagTGTTTCGGAGGAATCGCTTCGGAAGCAGATAACTTGTTAGATGAGCTTCAGCGCAGCCTATCGAAACAAGAAGAGAGGCTAGCCCATTTCGCAGTGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC