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gtagttgacaacctaaaccaccttcaattgtgttcataatgtttccactatcataaacgcttttcctcaattgcaattactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTAAGTGAGGCAAATGTGAATGTAGCTAAGGAAGAAGGACTAGTGAAGAAGT
species | Zea mays |
transcript | GRMZM2G021270_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAG GATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTAEST: gi|211094713|gb|FL034685.1|FL034685
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
EST: AAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCCATAGAG GATGTCACATCACAAGGNGATAAATGGAAGACGTCTACATTCAACTCAAAEST: gi|211097187|gb|FL034699.1|FL034699
genomic: AAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTC-ATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAA-TG-AAGACGTCTACATTCAACTCAAA
EST: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAG GATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTAEST: gi|211354445|gb|FK991822.1|FK991822
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
EST: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAG GATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTAEST: gi|86465874|gb|DY232247.1|DY232247
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
EST: AAAGTTTATCTCCAGATCCTAAAAACAAGGACAAAGTAACATTCATAGAG GATGTCACATCACAAGGTGATAATGAAGACGTCTACTTTCAACTCAAATTAEST: gi|211094718|gb|FL034690.1|FL034690
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
EST: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAG GATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTEST: gi|211354440|gb|FK991817.1|FK991817
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATT
EST: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAG GATGTCNCATCNCAAGGNGATAATGAAGACGTCTACATTCAACTCAAATTAEST: gi|211354441|gb|FK991818.1|FK991818
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
EST: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAG GATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTAEST: gi|9794356|gb|BE552664.1|BE552664
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
EST: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAG GATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTAEST: gi|211097189|gb|FL034701.1|FL034701
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
EST: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAG GATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTAEST: gi|211094725|gb|FL034697.1|FL034697
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
EST: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAG GATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTAEST: gi|211354443|gb|FK991820.1|FK991820
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
EST: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAG GATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTAEST: gi|211354442|gb|FK991819.1|FK991819
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
EST: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAG GATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
genomic: AAAGTTTAGCTCCAGATCCTAAGAACAAGGACAAAGTAACATTCATAGAGgtagttgaca ... tactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTA
ttcataatgtttccactatcataaacgcttttcctcaattgcaattactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTAAGTGAGGCAAATGTGAATGTAGCTAAGGAAGAAGGACTAGTGAAGAAGT
ttacttt CT-rich tract
aattacttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttgacaacctaaaccaccttcaattgtgttcataatgtttccactatcataaacgcttttcctcaattgcaattactttacagGATGTCACATCACAAGGTGATAATGAAGACGTCTACATTCAACTCAAATTAAGTGAGGCAAATGTGAATGTAGCTAAGGAAGAAGGACTAGTGAAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT