1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...ctactcaagtatgtgctctgtttggttgcttttactctttaaaacttgttgtgatttgcatggagccatggactaagctccagtttgatgctgtgtttagATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTTTTCAATTGGTTGGTGACCTTCTCTTTGGTCATGGTGGTCATCGGGCGCT
species | Zea mays |
transcript | GRMZM2G019361_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGGAATGTGTTGGACCTGCAAAAGAAAGCTATGAACGTAGAATGTCAAAG ATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTTEST: gi|91050205|gb|EB160623.1|EB160623
genomic: AGGAATGCGTTGGACCTGCAAAAGAAAGCTATGAACGTAGAATGTCAAAGgtttgcctgt ... ctgtgtttagATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTT
EST: AGGAATGCGTTGGACCTGCAAAAGAAAGCTATGAACGTAGAATGTCAAAG ATGCTTGCCCAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTTEST: gi|78115355|gb|DV533743.1|DV533743
genomic: AGGAATGCGTTGGACCTGCAAAAGAAAGCTATGAACGTAGAATGTCAAAGgtttgcctgt ... ctgtgtttagATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTT
EST: AGGAATGCGTTGGACCTGCAAAAGAAAGCTATGAACGTAGAATGTCAAAG ATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTTEST: gi|40335094|gb|CK369164.1|CK369164
genomic: AGGAATGCGTTGGACCTGCAAAAGAAAGCTATGAACGTAGAATGTCAAAGgtttgcctgt ... ctgtgtttagATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTT
EST: AGGAATGTGTTGGACCTGCAAAAGAAAGCTATGAACGTAGAATGTCAAAG ATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTTEST: gi|26456765|gb|CA828348.1|CA828348
genomic: AGGAATGCGTTGGACCTGCAAAAGAAAGCTATGAACGTAGAATGTCAAAGgtttgcctgt ... ctgtgtttagATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTT
EST: AGGAATGTGTTGGACCTGCAAAAGAAAGCTATGAACGTAGAATGTCAAAG ATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTT
genomic: AGGAATGCGTTGGACCTGCAAAAGAAAGCTATGAACGTAGAATGTCAAAGgtttgcctgt ... ctgtgtttagATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTT
ttgttgtgatttgcatggagccatggactaagctccagtttgatgctgtgtttagATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTTTTCAATTGGTTGGTGACCTTCTCTTTGGTCATGGTGGTCATCGGGCGCT
gtttgat putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctactcaagtatgtgctctgtttggttgcttttactctttaaaacttgttgtgatttgcatggagccatggactaagctccagtttgatgctgtgtttagATGCTTGCCAAGTCTCGTGCTCTTTTCATCAAGGAGTACAATAACAAGCTTTTCAATTGGTTGGTGACCTTCTCTTTGGTCATGGTGGTCATCGGGCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG