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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttaacacacactccaaatttggttttaacttctgccagtagtgcatgccttactgttctataaaaggattgaatgagtttgttttggtctatgtttagGTGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTGGTTCATCTCCTGTACAAAATGGCCCACCAACGTCAAACTTTAGCCTTCC

Basic information

species Zea mays
transcript GRMZM2G017421_T01
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017421_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os06g07090.1 (Oryza sativa), 3'ss of exon 14
tcttaacacacactc--caaatttggttttaacttctgccagtagtgcatgccttactgttctataaaaggattgaatgagtttgttt-tggtctatgtttagGTGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTGGTTCATCTCCTGTACAAAATGGCCCACCAACG---TCAAACTTTAGCCTTCC
| ||         |       || ||   |  | |       |    ||| |  |  |||  | || || | |   | |  ||||||| |||| |||||| |||||||||||| ||  ||||||| || |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||    ||||||||||||||   
tattgttctgttttggatggtttaggacatggcattgaatccttaatcatacagt-ttgtggtgtataatgctc--acggttttgtttctggtttatgttaagGTGGAGCTCCATCAGCAAGCACAGATATTCTGATGGATCTTCTATCAATTGGTTCTTCTCCAGTACAAAATGGCCCACCAACAGTATCAAACTTTAGCCT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931345|gb|CF036157.1|CF036157
EST:     TTTTCTACAGGATCTGTTGGGCATCGGTTTGACTGATTCGTCTCCTATAG                         GTGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATCGGTTTGACTGATTCGTCTCCTATAGgtcttacact ... ctatgtttagGTGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
EST: gi|78180334|gb|DV550707.1|DV550707
EST:     TTTTCTACAGGATCTGTTGGGCATCGGTTTGACTGATTCGTCTCCTATAG                         GTGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG
genomic: TTTTCTACAGGATCTGTTGGGCATCGGTTTGACTGATTCGTCTCCTATAGgtcttacact ... ctatgtttagGTGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgccttactgttctataaaaggattgaatgagtttgttttggtctatgtttagGTGGAGCTCCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTGGTTCATCTCCTGTACAAAATGGCCCACCAACGTCAAACTTTAGCCTTCC
   gccttac  putative branch site (score: 3)
            ttctataaaa  TA-rich tract