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...agagttccataatctagatgttacctagattatgttatgtccgttgaaaagtatgcgatttgaaatgatcatgctcattactggtatctcccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGGATCAAGGCTTGTGAGCTGTGAGGCGGATAAGACTATAAAGATGTGGAA
species | Zea mays |
transcript | GRMZM2G017089_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGWTCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|60342895|gb|DN209868.1|DN209868
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|31909551|gb|CD650975.1|CD650975
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|33091976|gb|CF051970.1|CF051970
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|5871794|gb|AW018265.1|AW018265
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: TATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|37376961|gb|CF625047.1|CF625047
genomic: TATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|78023548|gb|DV491935.1|DV491935
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|76013075|gb|DT940245.1|DT940245
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|166473545|gb|EG130749.1|EG130749
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCAACTGGAGAGTGAGGCATGCATATATGCCCTCEST: gi|4967045|gb|AI691809.1|AI691809
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCA-CTGGAGAGTGAGGCATGCATATATGCCCTC
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|6538870|gb|AW225009.1|AW225009
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|31406178|gb|CD484910.1|CD484910
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|71416740|gb|DR803804.1|DR803804
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|33091625|gb|CF051619.1|CF051619
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|6865096|gb|AW360446.1|AW360446
genomic: CTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCCCTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|33091991|gb|CF051985.1|CF051985
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|33093989|gb|CF053983.1|CF053983
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|5055899|gb|AI734786.1|AI734786
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|37382890|gb|CF628417.1|CF628417
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGEST: gi|101383542|gb|EB813827.1|EB813827
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATAT--GCCCTCTCATATGACGTGAGCGEST: gi|32933315|gb|CF038127.1|CF038127
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CTGGAAGAGTGGTCATAACTTTCAACAAGATCGGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCACATATGCCCTCTCATATGACGTGAGCGEST: gi|94478033|gb|EB706991.1|EB706991
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
EST: CGGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG GATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
genomic: CTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTGgtaagttttc ... ccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCG
gaaaagtatgcgatttgaaatgatcatgctcattactggtatctcccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGGATCAAGGCTTGTGAGCTGTGAGGCGGATAAGACTATAAAGATGTGGAA
tatctcccattttc CT-rich tract
atttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagttccataatctagatgttacctagattatgttatgtccgttgaaaagtatgcgatttgaaatgatcatgctcattactggtatctcccattttcagGATCACTGGAGAGTGAGGCATGCATATATGCCCTCTCATATGACGTGAGCGGATCAAGGCTTGTGAGCTGTGAGGCGGATAAGACTATAAAGATGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG