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...tgaagattatttgtagtcaagctaagctaaattgtggagaccatgtggatgtgcagaatggcgtgtattcataagttgtcaatatttgaaacctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG
species | Zea mays |
transcript | GRMZM2G017089_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|148951459|gb|EC897184.2|EC897184
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|60342895|gb|DN209868.1|DN209868
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|37376961|gb|CF625047.1|CF625047
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|116814103|gb|EC856623.1|EC856623
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTAEST: gi|71432304|gb|DR813354.1|DR813354
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|31406178|gb|CD484910.1|CD484910
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|32933315|gb|CF038127.1|CF038127
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTTTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|60357310|gb|DN224283.1|DN224283
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|93012802|gb|EB638322.1|EB638322
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|110491423|gb|EE013510.1|EE013510
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|78023548|gb|DV491935.1|DV491935
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: GCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|6538870|gb|AW225009.1|AW225009
genomic: GCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTTTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|71757914|gb|DR955851.1|DR955851
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|33093989|gb|CF053983.1|CF053983
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTTTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|4967045|gb|AI691809.1|AI691809
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|33091991|gb|CF051985.1|CF051985
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTTTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|6865096|gb|AW360446.1|AW360446
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTTTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|5055899|gb|AI734786.1|AI734786
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|101383542|gb|EB813827.1|EB813827
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|148950912|gb|EC896542.2|EC896542
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|37382890|gb|CF628417.1|CF628417
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|148943610|gb|EC888673.2|EC888673
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|71432303|gb|DR813353.1|DR813353
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|33091976|gb|CF051970.1|CF051970
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTTTTGGCAACTGGAG GGGATAATGGAAGCCTGCGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|33091634|gb|CF051628.1|CF051628
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTTTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCEST: gi|31909551|gb|CD650975.1|CD650975
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
EST: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAG GGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
genomic: AATAATCAATTCAATGGCTGTAAATGAGGATGGTGTCTTGGCAACTGGAGgtaatgtact ... acctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTC
tggatgtgcagaatggcgtgtattcataagttgtcaatatttgaaacctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG
aatatttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaagattatttgtagtcaagctaagctaaattgtggagaccatgtggatgtgcagaatggcgtgtattcataagttgtcaatatttgaaacctgtgcagGGGATAATGGAAGCCTGTGGTTTTGGGACTGGAAGAGTGGTCATAACTTTCAACAAGATCAGACTATAGTCCAGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
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- - - - - - - - - - - - - - - - - - - - - - gtggatg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcagaa