1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gaaagtttgaccctctacctgtaaggctgtaatgatcgaggacactgctagtgttatcttactagcttctaaacttagtttgctcatgtgttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGCTGTCTTGACACACAAGGGAAGAAGTGCAGACTCTGGCCACTATGTTGG
species | Zea mays |
transcript | GRMZM2G017086_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|5871756|gb|AW018227.1|AW018227
genomic: GCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|13316051|gb|BG410498.1|BG410498
genomic: GTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: ATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|13316052|gb|BG410499.1|BG410499
genomic: ATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GGGATCATCCAGTAGCGCTGGGGAAT-ATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|12968041|gb|BG264988.1|BG264988
genomic: GGGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: TGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|16378498|gb|BI992465.1|BI992465
genomic: TGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|32930721|gb|CF035533.1|CF035533
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|32866634|gb|CF006316.1|CF006316
genomic: GTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|32932882|gb|CF037694.1|CF037694
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|13177837|gb|BG349020.1|BG349020
genomic: GGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: CATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|12968042|gb|BG264989.1|BG264989
genomic: CATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGGCAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|31910881|gb|CD651645.1|CD651645
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGEST: gi|50332355|gb|CO527481.1|CO527481
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAG CTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTTTATGATTTGGTTGEST: gi|5919412|gb|AW054509.1|AW054509
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
EST: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGCCATTGCCAAAG CTGAGTCTTCTCTACCAAAGAACCAATTAACTGGCGTCTATGATTTGGTTG
genomic: GGATCATCCAGTAGCGCTGGGGAATCATCCAGTATGGACATTGACAAAGgcaagttgtt ... ttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTG
tgctagtgttatcttactagcttctaaacttagtttgctcatgtgttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGCTGTCTTGACACACAAGGGAAGAAGTGCAGACTCTGGCCACTATGTTGG
ttctaaa putative branch site (score: 2)
ttatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtttgaccctctacctgtaaggctgtaatgatcgaggacactgctagtgttatcttactagcttctaaacttagtttgctcatgtgttaaatgcagCTGAGTCTTCTCTACCAAAGAAACAATTAACTGGCGTCTATGATTTGGTTGCTGTCTTGACACACAAGGGAAGAAGTGCAGACTCTGGCCACTATGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT