1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...taggatggcctcatcagtctctaaggatcttgtttctttgtttacgtcttatttgttattctgttcatttcttagttactttttttgtttgattacacagGTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAAGTCCTGAATTCCTCTGAT
species | Zea mays |
transcript | GRMZM2G001895_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGAAGTGGAATGAATCAGAGGCTTCAATTGGACGTGTTTTGGCTGTGGAG GTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAAEST: gi|16927351|gb|BM080420.1|BM080420
genomic: TGAAGTGGAATGAATCAGAGGCTTCAATTGGACGTGTTTTGGCTGTGGAGgtaactgttg ... gattacacagGTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAA
EST: TGAAGTGGAATGAATCAGAGGCTTCAATTGGACGTGTTTTGGCTGTGGAG GTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAAEST: gi|6012267|gb|AW061809.1|AW061809
genomic: TGAAGTGGAATGAATCAGAGGCTTCAATTGGACGTGTTTTGGCTGTGGAGgtaactgttg ... gattacacagGTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAA
EST: TGAAGTGGAATGAATCAGAGGCTTCAATTGGACGTGTTTTGGCTGTGGAG GTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAAEST: gi|71596430|gb|DR907181.1|DR907181
genomic: TGAAGTGGAATGAATCAGAGGCTTCAATTGGACGTGTTTTGGCTGTGGAGgtaactgttg ... gattacacagGTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAA
EST: TGAAGTGGAATGAATCAGAGGCTTCAATTGGACGTGTTTTGGCTGTGGAG GTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAAEST: gi|89761888|gb|DY689721.1|DY689721
genomic: TGAAGTGGAATGAATCAGAGGCTTCAATTGGACGTGTTTTGGCTGTGGAGgtaactgttg ... gattacacagGTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAA
EST: TGAAGTGGAATGAATCAGAGGCTTCAATTGGACGTGTTTTGGCTGTGGAG GTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAA
genomic: TGAAGTGGAATGAATCAGAGGCTTCAATTGGACGTGTTTTGGCTGTGGAGgtaactgttg ... gattacacagGTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAA
gtcttatttgttattctgttcatttcttagttactttttttgtttgattacacagGTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAAGTCCTGAATTCCTCTGAT
gtttgat putative branch site (score: 99)
tttttttgtttgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggatggcctcatcagtctctaaggatcttgtttctttgtttacgtcttatttgttattctgttcatttcttagttactttttttgtttgattacacagGTGCTTCATGCTTTTGCAACCGAAGGTGCACATTGTGCTAGAGTTCGTGAAGTCCTGAATTCCTCTGAT
- - - - - - - - - - - - - - - tgtttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtt