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...aagttaagcattttaattaatataggacaaacttgaatttgcatagtgcaaactacagatagctaatacctgacatgctcacatgcattcctttgaacagGCTGAGAACATCAAATTTACCTTGGAGCAGGAGATGGTGTTCTTGGCAAGATTAGTGGGAGAGTTCAAGGTGCCTGATGACATAACTCCAATCAAGATTG
species | Zea mays |
transcript | GRMZM2G000231_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ACAACATGGCTTCCGCAAG GCTGAGAACATCAAATTTACCTTGGAGCAGGAGATGGTGTTCTTGGCAAGAEST: gi|166495928|gb|EG136869.1|EG136869
genomic: ACAACATGGCTTCCGCAAGgtccagtgat ... ctttgaacagGCTGAGAACATCAAATTTACCTTGGAGCAGGAGATGGTGTTCTTGGCAAGA
EST: GTTGAGTACGAAGGGGAACAACATGGCTTCCGCAAG GCTGAGAACATCAAATTTACCTTGGAGCAGGAGATGGTGTTCTTGGCAAGAEST: gi|166646460|gb|EG211249.1|EG211249
genomic: GTTGAGTACGAAGGGGAACAACATGGCTTCCGCAAGgtccagtgat ... ctttgaacagGCTGAGAACATCAAATTTACCTTGGAGCAGGAGATGGTGTTCTTGGCAAGA
EST: TTGAGTACGAAGGGGAACAACATGGCTTCCGCAAG GCTGAGAACATCAAATTTACCTTGGAGCAGGAGATGGTGTTCTTGGCAAGAEST: gi|113672344|gb|DW824224.1|DW824224
genomic: TTGAGTACGAAGGGGAACAACATGGCTTCCGCAAGgtccagtgat ... ctttgaacagGCTGAGAACATCAAATTTACCTTGGAGCAGGAGATGGTGTTCTTGGCAAGA
EST: TTCCCGTTGCTTTGGTTGAGTACGAAGGGGAACAACATGGCTTCCGCAAG GCTGAGAACATCAAATTTACCTTGGAG
genomic: TTCCCGTTGCTTTGGTTGAGTACGAAGGGGAACAACATGGCTTCCGCAAGgtccagtgat ... ctttgaacagGCTGAGAACATCAAATTTACCTTGGAG
gtgcaaactacagatagctaatacctgacatgctcacatgcattcctttgaacagGCTGAGAACATCAAATTTACCTTGGAGCAGGAGATGGTGTTCTTGGCAAGATTAGTGGGAGAGTTCAAGGTGCCTGATGACATAACTCCAATCAAGATTG
tgctcac putative branch site (score: 4)
cattccttt putative PPT
taata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagttaagcattttaattaatataggacaaacttgaatttgcatagtgcaaactacagatagctaatacctgacatgctcacatgcattcctttgaacagGCTGAGAACATCAAATTTACCTTGGAGCAGGAGATGGTGTTCTTGGCAAGATTAGTGGGAGAGTTCAAGGTGCCTGATGACATAACTCCAATCAAGATTG
- - - - - - - - - - - - ggacaaa
- - - - - - - - - - - - - - - - - - -tttgcat
- - - - - - - - - - - - - - - - - - - - - - - - - aactaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattc