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gttaaatcaaattgtcttactacgtccattgtttcactgtggtttacctttatcatctttttttatatttgtttgttcacttatatttttcttgcagCATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGTCATATGACACGGATAGCTAACAGGCTCCTTCAGCTGGTCAACACAAACA
species | Zea mays |
transcript | GRMZM2G000039_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GAATTCTGGAAGCAGAGAAGAACTCTGCTCTGTCGTCAGATTTAACTAAG CATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGTEST: gi|76288179|gb|DV027747.1|DV027747
genomic: GAATTCTGGAAGCAGAGAAGAACTCTGCTCTGTCGTCAGATTTAACTAAGgttaaatcaa ... tttcttgcagCATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGT
EST: GAATTCTGGAAGCAGAGAAGAACTCTGCTCTGTCGTCAGATTTAACTAAG CATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGTEST: gi|37420986|gb|CF648189.1|CF648189
genomic: GAATTCTGGAAGCAGAGAAGAACTCTGCTCTGTCGTCAGATTTAACTAAGgttaaatcaa ... tttcttgcagCATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGT
EST: GAATTCTGGAAGCAGAGAAGAACTCTGCTCTGTCGTCAGATTTAACTAAG CATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGTEST: gi|37421188|gb|CF648290.1|CF648290
genomic: GAATTCTGGAAGCAGAGAAGAACTCTGCTCTGTCGTCAGATTTAACTAAGgttaaatcaa ... tttcttgcagCATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGT
EST: GAATTCTGGAAGCAGAGAAGAACTCTGCTCTGTCGTCAGATTTAACTAAG CATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGTEST: gi|13516069|gb|BG518345.1|BG518345
genomic: GAATTCTGGAAGCAGAGAAGAACTCTGCTCTGTCGTCAGATTTAACTAAGgttaaatcaa ... tttcttgcagCATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGT
EST: GAATTCTGGAAGCAGAGAAGAACTCTGCTCTGTCGTCAGATTTAACTAAG CATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGT
genomic: GAATTCTGGAAGCAGAGAAGAACTCTGCTCTGTCGTCAGATTTAACTAAGgttaaatcaa ... tttcttgcagCATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGT
tttacctttatcatctttttttatatttgtttgttcacttatatttttcttgcagCATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGTCATATGACACGGATAGCTAACAGGCTCCTTCAGCTGGTCAACACAAACA
cttatatttttctt CT-rich tract
atctttttttatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaatcaaattgtcttactacgtccattgtttcactgtggtttacctttatcatctttttttatatttgtttgttcacttatatttttcttgcagCATACTATGTCTTCAGAGGGAAGATCTCCCCCAAGGATAGGAATTGTTGGTCATATGACACGGATAGCTAACAGGCTCCTTCAGCTGGTCAACACAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG