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gtacacaccaaacagatggtccacttaacaccaaagatgttcgatggctgttgtaggccatagctaacgcaattacgattttgcagGACTTCATCTATGAGGGCGAGCTGAACAATTTCGTTGAGCAAGGAGCACTGTCTGAGCTGGTTCTTGCCTTCTCGCGCCAGGGCCTTGCTAAGGAATATG
species | Zea mays |
transcript | AC217947.4_FGT002 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATG GACTTCATCTATGAGGGCGAGCTGAACAATTTCCTTGAGCAAGGAGCACTGEST: gi|211060797|gb|FL421770.1|FL421770
genomic: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATGgtacacacca ... gattttgcagGACTTCATCTATGAGGGCGAGCTGAACAATTTCGTTGAGCAAGGAGCACTG
EST: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATG GACTTCATCTATGAGGGCGAGCTGAACAATTTCCTTGAGCAAGGAGCATTGEST: gi|113858940|gb|DW975890.1|DW975890
genomic: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATGgtacacacca ... gattttgcagGACTTCATCTATGAGGGCGAGCTGAACAATTTCGTTGAGCAAGGAGCACTG
EST: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATG GACTTCATCTATGAGGGC-AGCTGAACEST: gi|76932021|gb|DV172915.1|DV172915
genomic: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATGgtacacacca ... gattttgcagGACTTCATCTATGAGGGCGAGCTGAAC
EST: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATG GACTTCATCTATGEST: gi|32842091|gb|CD981772.1|CD981772
genomic: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATGgtacacacca ... gattttgcagGACTTCATCTATG
EST: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATG GACTTCATCTATGAGGGCGAGCTGAACAATTTCCTTGAGCAAGGAGCACTGEST: gi|32842090|gb|CD981771.1|CD981771
genomic: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATGgtacacacca ... gattttgcagGACTTCATCTATGAGGGCGAGCTGAACAATTTCGTTGAGCAAGGAGCACTG
EST: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATG GACTTCATCTATGAGGGCGAGCTGAACAATTTCCTTGAGCAAGGAGCACTG
genomic: CTGAGCTTGGTCGATCTGTGTTCTTCTTTGGATGCAGAAACAGCAAGATGgtacacacca ... gattttgcagGACTTCATCTATGAGGGCGAGCTGAACAATTTCGTTGAGCAAGGAGCACTG
caaagatgttcgatggctgttgtaggccatagctaacgcaattacgattttgcagGACTTCATCTATGAGGGCGAGCTGAACAATTTCGTTGAGCAAGGAGCACTGTCTGAGCTGGTTCTTGCCTTCTCGCGCCAGGGCCTTGCTAAGGAATATG
agctaac putative branch site (score: 273)
aatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacaccaaacagatggtccacttaacaccaaagatgttcgatggctgttgtaggccatagctaacgcaattacgattttgcagGACTTCATCTATGAGGGCGAGCTGAACAATTTCGTTGAGCAAGGAGCACTGTCTGAGCTGGTTCTTGCCTTCTCGCGCCAGGGCCTTGCTAAGGAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA