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...ttcttatcacaatatagttgtatactcttctcgaattgtcattgtcagctcctggtcattctagaaattttattgcgaagtcttcatgtcgtttgtgcagATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTATTCTATATTGACTATGGCAACCAAGAGGTGGTTACCTACAGTCGTTTAC
species | Zea mays |
transcript | AC207890.3_FGT002 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGATAGTCCTCGCACAATTTAGCGTTGACAACTCCTGGAACAGAGCTATG ATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTAEST: gi|33091545|gb|CF051539.1|CF051539
genomic: AGATAGTCCTCGCACAATTTAGCGTTGACAACTCCTGGAACAGAGCTATGgtatgtgtac ... gtttgtgcagATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTA
EST: AGATAGTCCTCGCACAATTTAGCGTTGACAACTCCTGGAACAGAGCTATG ATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTAEST: gi|211483957|gb|FL010660.1|FL010660
genomic: AGATAGTCCTCGCACAATTTAGCGTTGACAACTCCTGGAACAGAGCTATGgtatgtgtac ... gtttgtgcagATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTA
EST: AGATAGTCCTCGCACAATTTAGCGTTGACAACTCCTGGAACAGAGCTATG ATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTAEST: gi|211483950|gb|FL010653.1|FL010653
genomic: AGATAGTCCTCGCACAATTTAGCGTTGACAACTCCTGGAACAGAGCTATGgtatgtgtac ... gtttgtgcagATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTA
EST: AGATAGTCCTCGCACAATTTARCGTTGACAACTCCTGGAACAGAGCTATG ATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTAEST: gi|32865345|gb|CF005027.1|CF005027
genomic: AGATAGTCCTCGCACAATTTAGCGTTGACAACTCCTGGAACAGAGCTATGgtatgtgtac ... gtttgtgcagATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTA
EST: AGATAGTCCTCGCACAATTTAGCGTTGACAACTCCTGGAACAGAGCTATG ATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTAEST: gi|31360192|gb|CD444549.1|CD444549
genomic: AGATAGTCCTCGCACAATTTAGCGTTGACAACTCCTGGAACAGAGCTATGgtatgtgtac ... gtttgtgcagATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTA
EST: GACAACTCCTGGAACAGAGCTATG ATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTA
genomic: GACAACTCCTGGAACAGAGCTATGgtatgtgtac ... gtttgtgcagATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTA
cagctcctggtcattctagaaattttattgcgaagtcttcatgtcgtttgtgcagATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTATTCTATATTGACTATGGCAACCAAGAGGTGGTTACCTACAGTCGTTTAC
attctagaaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttatcacaatatagttgtatactcttctcgaattgtcattgtcagctcctggtcattctagaaattttattgcgaagtcttcatgtcgtttgtgcagATTGTTAATGGACCTCGTTCTGTTGAATCTCCGGACGACAAGTTTGAAGTATTCTATATTGACTATGGCAACCAAGAGGTGGTTACCTACAGTCGTTTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - -atcacaa
- - - - - - - - - - - - - - - - - - - - - - - -gctcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcatg