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gtttttatctatgagcaatgtgatatcctgaagtgcaatgcataatttaatatagtaaaaatattggttgatttgaacttattttctgtgatgttttctcgtgcagGGAGCTGTTAATATCCTTCAGGAAGGCCACTGGGCAGAAGCCATTGAGAATAATATTCTACAG
species | Zea mays |
transcript | AC189879.3_FGT003 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAAACATGGCACGATCCTCAGAGAGGCACTGTAACAGGCGGCATGATCAG GGAGCTGTTAATATCCTTCAGGAAGGCCACTGGGCAGAAGCCATTGAGAATEST: gi|211241581|gb|FL211915.1|FL211915
genomic: AAAACATGGCACGATCCTCAGAGAGGCACTGTAACAGGCGGCATGATCAGgtttttatct ... tctcgtgcagGGAGCTGTTAATATCCTTCAGGAAGGCCACTGGGCAGAAGCCATTGAGAAT
EST: AAAACATGGCACGATCCTCAGAGAGGCACTGTAACAGGCGGCATGATCAG GGAGCTGTTAATATCCTTCAGGAAGGCCACTGGGCAGAAGCCATTGAGAATEST: gi|9566493|gb|BE476002.1|BE476002
genomic: AAAACATGGCACGATCCTCAGAGAGGCACTGTAACAGGCGGCATGATCAGgtttttatct ... tctcgtgcagGGAGCTGTTAATATCCTTCAGGAAGGCCACTGGGCAGAAGCCATTGAGAAT
EST: AAAACATGGCACGATCCTCAGAGAGGCACTGTAACAGGCGGCATGATCAG GGAGCTGTTAATATCCTTCAGGAAGGCCACTGGGCAGAAGCCATTGAGAATEST: gi|20301316|gb|BQ164259.1|BQ164259
genomic: AAAACATGGCACGATCCTCAGAGAGGCACTGTAACAGGCGGCATGATCAGgtttttatct ... tctcgtgcagGGAGCTGTTAATATCCTTCAGGAAGGCCACTGGGCAGAAGCCATTGAGAAT
EST: AAAACATGGCACGATCCTCAGAGAGGCACTGTAACAGGCGGCATGATCAG GGAGCTGTTAATATCCTTCAGGAAGGCCACTGGGCAGAAGCCATTGAGAAT
genomic: AAAACATGGCACGATCCTCAGAGAGGCACTGTAACAGGCGGCATGATCAGgtttttatct ... tctcgtgcagGGAGCTGTTAATATCCTTCAGGAAGGCCACTGGGCAGAAGCCATTGAGAAT
atagtaaaaatattggttgatttgaacttattttctgtgatgttttctcgtgcagGGAGCTGTTAATATCCTTCAGGAAGGCCACTGGGCAGAAGCCATTGAGAATAATATTCTACAG
ggttgat putative branch site (score: 65)
tgttttctc putative PPT
atttgaacttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttatctatgagcaatgtgatatcctgaagtgcaatgcataatttaatatagtaaaaatattggttgatttgaacttattttctgtgatgttttctcgtgcagGGAGCTGTTAATATCCTTCAGGAAGGCCACTGGGCAGAAGCCATTGAGAATAATATTCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC