1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtacgtgcgaagctagcagtgctgcgctgccgccctagctcgactcatgtgctagcaaagcaagagtactcactgagtcactgatgaaaaaacgcctctggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
species | Zea mays |
transcript | GRMZM5G877788_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|211451241|gb|FL460010.1|FL460010
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATYTT GTTYTCGTGGGCACAGAAGCGCCAGCAWGCCGCGTTCTTTCCAGEST: gi|6021969|gb|AW066897.1|AW066897
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|211396502|gb|FK986087.1|FK986087
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|76926346|gb|DV170820.1|DV170820
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|71427484|gb|DR808534.1|DR808534
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|76018157|gb|DT945327.1|DT945327
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTTTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTTTTGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|78123316|gb|DV541700.1|DV541700
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|74243543|gb|DT651457.1|DT651457
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|149077505|gb|EE166202.2|EE166202
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|74233874|gb|DT641788.1|DT641788
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|94474394|gb|EB703352.1|EB703352
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTTTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|71428520|gb|DR809570.1|DR809570
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAGEST: gi|78084898|gb|DV513291.1|DV513291
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
EST: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTT GTTTTTGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTTCAG
genomic: ACGGCGATGTCTCTGTCCAAGGCGTTCGCTCCGGCCGTGGCCGGCATCTTgtacgtgcga ... tggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
agcaaagcaagagtactcactgagtcactgatgaaaaaacgcctctggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
cgcctct CT-rich tract
atgaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgcgaagctagcagtgctgcgctgccgccctagctcgactcatgtgctagcaaagcaagagtactcactgagtcactgatgaaaaaacgcctctggtttgtagGTTCTCGTGGGCACAGAAGCGCCAGCATGCCGCGTTCTTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC