1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagactcaaaacaccgaatatatctcaactcaaattgattcttttactagctggcagtaggagctaaccagtataaggtgctattatcaaactgtaatatggtcgcatattcagctaggcctaattaagttgtattttttccttttacaactgttgtgcaatttgactaactgctgcaccttgatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTAGTAGTCCCATAGAACATTTCTTAATTTAATTTGGCAATAAAGCAAAAG
species | Zea mays |
transcript | GRMZM5G866758_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|30088105|gb|CB886310.1|CB886310
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|32919681|gb|CF024493.1|CF024493
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|33096645|gb|CF056639.1|CF056639
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|101395308|gb|EB819584.1|EB819584
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTTTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|71309358|gb|DR790968.1|DR790968
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|211193824|gb|FL472434.1|FL472434
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|78091101|gb|DV519475.1|DV519475
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|110525002|gb|EE029186.1|EE029186
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|93281704|gb|EB673968.1|EB673968
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTTTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|78087734|gb|DV516127.1|DV516127
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTTTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|76921549|gb|DV168617.1|DV168617
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|33095848|gb|CF055842.1|CF055842
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|71309359|gb|DR790969.1|DR790969
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|31909499|gb|CD650949.1|CD650949
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|211155574|gb|FL331213.1|FL331213
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: ATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|76284259|gb|DV023827.1|DV023827
genomic: ATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGCTGTEST: gi|193502028|gb|AM938160.1|AM938160
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGAATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTGGCAAAAGCTCCCTGAGGTGATCTTGTTGTCTTATTTTCCGTTGTEST: gi|193502203|gb|AM938237.1|AM938237
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGAATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTGGCAAAAGCTCCCTGAGGTGATCTTGTTGTCTTATTTTCCGTTGTEST: gi|30306466|gb|CD001139.1|CD001139
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|211522817|gb|FL338578.1|FL338578
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: ATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|149016999|gb|EE154316.2|EE154316
genomic: ATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|76936635|gb|DV174816.1|DV174816
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|211206261|gb|FL471226.1|FL471226
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|29544660|gb|CB605040.1|CB605040
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|32864390|gb|CF004072.1|CF004072
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|76017958|gb|DT945128.1|DT945128
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|32864696|gb|CF004378.1|CF004378
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTTTGGAGCTCGCATAAAAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTEST: gi|32862142|gb|CF001824.1|CF001824
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
EST: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTT GTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
genomic: GGCGGAGCATCAGCTCTTGTTCTGGAGCTCGCATAAGAAATCTAGACCTTgtaagactca ... gatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGT
tttccttttacaactgttgtgcaatttgactaactgctgcaccttgatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTAGTAGTCCCATAGAACATTTCTTAATTTAATTTGGCAATAAAGCAAAAG
ttttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagactcaaaacaccgaatatatctcaactcaaattgattcttttactagctggcagtaggagctaaccagtataaggtgctattatcaaactgtaatatggtcgcatattcagctaggcctaattaagttgtattttttccttttacaactgttgtgcaatttgactaactgctgcaccttgatattgcagGTAGTTAGCAAAAGCTCCCTGAGGTGATCTTGTAGTCTTATTTTCCGTTGTAGTAGTCCCATAGAACATTTCTTAATTTAATTTGGCAATAAAGCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA